PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 180aa MW: 20052 Da PI: 5.2386 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 138.8 | 1.4e-43 | 7 | 108 | 2 | 100 |
NF-YC 2 lksfwekqieka...tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 l+ fw++q++++ +dfknh+lPlarikki+kade+vkmi+ae+Pv++skace+filelt r++ +ae nkr+tl ksd++ av++ ++fdflvdivp PEQU_07641 7 LQLFWADQLQEVlaiKDFKNHSLPLARIKKIMKADEEVKMIAAETPVIFSKACEMFILELTHRAYFQAELNKRKTLLKSDLSLAVANHQMFDFLVDIVP 105 899*****665422289********************************************************************************** PP NF-YC 98 rde 100 +e PEQU_07641 106 MEE 108 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.77E-27 | 23 | 106 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-18 | 28 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.2E-33 | 29 | 105 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MQQELRLQLF WADQLQEVLA IKDFKNHSLP LARIKKIMKA DEEVKMIAAE TPVIFSKACE 60 MFILELTHRA YFQAELNKRK TLLKSDLSLA VANHQMFDFL VDIVPMEEAA HGGAAAAATI 120 PGVEELNQSI PCFYDPSNFS SLMVDMRHPE MLPHGSSSTQ QHQYGNASED GGTPPPSSPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-38 | 14 | 105 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577550.1 | 1e-131 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 5e-46 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2H9ZQS6 | 1e-63 | A0A2H9ZQS6_9ASPA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | GRMZM2G113127_P01 | 6e-47 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-46 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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