PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HSF | ||||||||
Protein Properties | Length: 463aa MW: 50824.6 Da PI: 4.8509 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.3e-36 | 17 | 109 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw +n+fvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +++k+ll++i+ PEQU_07498 17 FLSKTYDMVDDPATDSIVSWGPGNNTFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRDQKHLLKNIN 104 9*********************99*****************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkks+ PEQU_07498 105 RKKSS 109 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.4E-62 | 13 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-39 | 13 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.4E-36 | 13 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.9E-20 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-31 | 17 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 56 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MDGGGGAVVG SGGPPPFLSK TYDMVDDPAT DSIVSWGPGN NTFVVWNPPE FARDLLPKYF 60 KHNNFSSFVR QLNTYGFRKI DPDRWEFANE GFLRDQKHLL KNINRKKSSH AHTQPPSLPQ 120 NPSVTSCVEV GKFGLDEEIE RLKRDKNVLM QELVRLRQQQ QTTDHQLQAL NKRIHGMEQR 180 QQQMMSFLAK AINSPEFLAQ LVQQNNANNQ LISGGNKKRR LPNQGELEAE STSPDTQMVK 240 YQPLLTEAAK LMLTQAINSE SSPSMDSFSK PDNIIQHGNL HLSSDTLDSS RSSSSRSSGV 300 TFQENSRGFS AVSSSSPLSE IQSPSVVTDP GNNILPIFPE EIPHTDIGFL SMSHAASEAE 360 NALAQSIAGV DGMTALELEK FAGDASIRIF SEGDGTILPG IVDSFWEQFL SASPISGDTD 420 EVNSGFPDAT ETTKLLGQGW DGVHNMDNLT EQMGLLTSKS EVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-27 | 8 | 109 | 11 | 123 | Heat shock factor protein 1 |
5d5u_B | 3e-27 | 10 | 106 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 10 | 106 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 10 | 106 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577357.1 | 0.0 | heat stress transcription factor A-1-like isoform X1 | ||||
Swissprot | Q84T61 | 1e-165 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A2I0VZ92 | 0.0 | A0A2I0VZ92_9ASPA; Heat stress transcription factor A-1 | ||||
STRING | XP_008800101.1 | 1e-172 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5097 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-98 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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