PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07163
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 196aa    MW: 22334.1 Da    PI: 8.802
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07163genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.4e-151069155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                s+y+GV+  k++g+++A+++d  s+  g  ++ k+++lg+++++e+Aa+a++ a +k++g
  PEQU_07163 10 SCYHGVTKLKWSGKYEAHLWDnTSKvEGrkRKgKHVYLGSYDSEEKAARAHDLAVLKYWG 69
                79*******************666696665336*************************98 PP
2AP251.82e-16115167255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++k +g+W A+I  +   g  r  k ++lg+f t+eeAa+a++ a+ +l+g
  PEQU_07163 115 AYRGVTRRK-DGKWQARIGRV---GeSRdvKDIYLGTFETEEEAAEAYDIAAIELRG 167
                 69****999.9*******998...553458*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-151081IPR016177DNA-binding domain
PfamPF008476.2E-121069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-131180IPR001471AP2/ERF domain
PROSITE profilePS5103217.4251179IPR001471AP2/ERF domain
SMARTSM003801.2E-191185IPR001471AP2/ERF domain
CDDcd000183.90E-151281No hitNo description
SuperFamilySSF541715.49E-18114177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-20115175IPR001471AP2/ERF domain
PROSITE profilePS5103219.124115175IPR001471AP2/ERF domain
PfamPF008471.8E-10115167IPR001471AP2/ERF domain
SMARTSM003801.2E-27115181IPR001471AP2/ERF domain
PRINTSPR003672.3E-8116127IPR001471AP2/ERF domain
PRINTSPR003672.3E-8157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRKYAVPRSS CYHGVTKLKW SGKYEAHLWD NTSKVEGRKR KGKHVYLGSY DSEEKAARAH  60
DLAVLKYWGP GQTSKLNFPV SDYAKELEIM ETMSQDEYVV HVRRQSSCFS RGASAYRGVT  120
RRKDGKWQAR IGRVGESRDV KDIYLGTFET EEEAAEAYDI AAIELRGVHA VTNFDISNYC  180
EGSFKQMDGP PCKLET
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575716.11e-146AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ1PFE12e-72AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ32e-72AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2I0WE051e-125A0A2I0WE05_9ASPA; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008807712.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.19e-64AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]