PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_07144

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 398aa MW: 45070 Da PI: 7.1147

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07144	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.6e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yL++k+++++l++ e i+++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ PEQU_07144 14 MLPGFRFHPTDEELVGFYLRRKIQQRPLSI-ELIRQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTK 111 579*************************.89***********9888999***********************************95666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl PEQU_07144 112 CIGLKKSLVFYKGRAAKGMKTDWMMHEFRL 141 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-58	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.794	14	173	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEEKSDMDKG DEIMLPGFRF HPTDEELVGF YLRRKIQQRP LSIELIRQLD IYKYDPWDLP 60 KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGM KTDWMMHEFR LPSLTDPSIS KRPVDKNFIP ANESWAICRI FKKTNTSTQR 180 ALSHSWVSSL PESTDLDKFS IPRAMNLTHF ASENTSCSTE IGSAIQFGCN STGLEHHGSA 240 VTYPSLDFAN FKSINLSSCK SSEMPTSFMF SPPETSMPIK PSVDVTSMLL NLSPNILQDM 300 EKSSPSIDFE QPHQTNGFTV TFPLEANGSL VTDEEEMISK KSLSCITGGN NQWGNLRTMN 360 FPFNLTNSSD DWKLNLLWDS ALCPSEMSTG YSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEEKSDMDKG DEIMLPGFRF HPTDEELVGF YLRRKIQQRP LSIELIRQLD IYKYDPWDLP  60
KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGM KTDWMMHEFR LPSLTDPSIS KRPVDKNFIP ANESWAICRI FKKTNTSTQR  180
ALSHSWVSSL PESTDLDKFS IPRAMNLTHF ASENTSCSTE IGSAIQFGCN STGLEHHGSA  240
VTYPSLDFAN FKSINLSSCK SSEMPTSFMF SPPETSMPIK PSVDVTSMLL NLSPNILQDM  300
EKSSPSIDFE QPHQTNGFTV TFPLEANGSL VTDEEEMISK KSLSCITGGN NQWGNLRTMN  360
FPFNLTNSSD DWKLNLLWDS ALCPSEMSTG YSTNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	16	179	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	16	179	22	174	NAC domain-containing protein 19
3swm_B	2e-53	16	179	22	174	NAC domain-containing protein 19
3swm_C	2e-53	16	179	22	174	NAC domain-containing protein 19
3swm_D	2e-53	16	179	22	174	NAC domain-containing protein 19
3swp_A	2e-53	16	179	22	174	NAC domain-containing protein 19
3swp_B	2e-53	16	179	22	174	NAC domain-containing protein 19
3swp_C	2e-53	16	179	22	174	NAC domain-containing protein 19
3swp_D	2e-53	16	179	22	174	NAC domain-containing protein 19
4dul_A	2e-53	16	179	19	171	NAC domain-containing protein 19
4dul_B	2e-53	16	179	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575646.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-107	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2I0XBM0	0.0	A0A2I0XBM0_9ASPA; Protein FEZ
STRING	XP_008784123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-109	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]