PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 53aa MW: 6328.52 Da PI: 11.1578 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.2e-12 | 4 | 44 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq PEQU_07052 4 QRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 44 79*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.821 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 4 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-13 | 4 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-13 | 4 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.57E-8 | 4 | 48 | No hit | No description |
SMART | SM00353 | 3.9E-8 | 4 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
FSLQRRRERI NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKVS KKK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661366.2 | 2e-22 | transcription factor bHLH54 | ||||
Refseq | XP_016666544.1 | 2e-22 | PREDICTED: transcription factor bHLH84-like | ||||
Refseq | XP_017645278.1 | 2e-22 | PREDICTED: transcription factor bHLH84-like | ||||
Swissprot | Q7XHI9 | 5e-21 | BH084_ARATH; Transcription factor bHLH84 | ||||
Swissprot | Q84WK0 | 7e-21 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A4D9A4S0 | 3e-23 | A0A4D9A4S0_SALSN; Uncharacterized protein | ||||
STRING | Pavir.Ia04640.1.p | 1e-21 | (Panicum virgatum) | ||||
STRING | OGLUM07G20330.1 | 1e-21 | (Oryza glumipatula) | ||||
STRING | ORUFI07G21430.1 | 9e-22 | (Oryza rufipogon) | ||||
STRING | OS07T0588400-00 | 9e-22 | (Oryza sativa) | ||||
STRING | OB07G26210.1 | 8e-22 | (Oryza brachyantha) | ||||
STRING | ONIVA07G18960.1 | 1e-21 | (Oryza nivara) | ||||
STRING | OPUNC07G19390.1 | 9e-22 | (Oryza punctata) | ||||
STRING | LPERR07G17840.1 | 8e-22 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP56240 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.3 | 9e-24 | bHLH family protein |
Publications ? help Back to Top | |||
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