PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 353aa    MW: 38383.9 Da    PI: 5.5234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS205.82.4e-63203182290
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 
                 ++lL++cA+a++++d++laq+lL+ l+++a pdgd++qRl++ f++AL  r +r +s+++   +p + +      +l+a +l  f +++P+++f++ +a
  PEQU_07040  20 EQLLVHCAHAIEANDATLAQQLLWVLHNIAPPDGDSNQRLTSAFLRALLLRASRAGSSISGPATPHHPQ---LPLRLSAISLagFIDLTPWHRFGFSAA 115
                 79****************************************************999999776666665...777777777778*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..e 190
                 N+aI + ++g   +H +D+  ++++Q p+L++ LasRpegpp +R+T+v+ p +         ++ e+g rL +fA++ +v ++f v++++  + +   
  PEQU_07040 116 NSAIADVADGFPVLHLVDLT-THCMQIPTLIDVLASRPEGPPFVRLTVVSTPPEMcppptLDISVDELGCRLVNFARSRNVGMDFCVVASTPADGFqsL 213
                 *******************6.89****************************99889998778899**********************855544444112 PP

        GRAS 191 leeLrvkp...gEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                 +e L  ++   gEal++n++++ hr++des++  + s+r+ + k+++sl+P +vv+v++ead ++++ ++r+  a++y++  fd++e+ l+  seer+ 
  PEQU_07040 214 IEYLGASSnnaGEALVINCHMMPHRIPDESAAggMISPRTMFAKALRSLEPSLVVIVDEEADFTASDVVTRLRAAFNYMWIPFDAVETFLAVGSEERRR 312
                 77786666678*****************997633667************************************************************** PP

        GRAS 285 vErell 290
                 +E +++
  PEQU_07040 313 YEGAVM 318
                 998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.6151353IPR005202Transcription factor GRAS
PfamPF035148.4E-6120318IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
SSPRPRTKSL KNLNNAACME QLLVHCAHAI EANDATLAQQ LLWVLHNIAP PDGDSNQRLT  60
SAFLRALLLR ASRAGSSISG PATPHHPQLP LRLSAISLAG FIDLTPWHRF GFSAANSAIA  120
DVADGFPVLH LVDLTTHCMQ IPTLIDVLAS RPEGPPFVRL TVVSTPPEMC PPPTLDISVD  180
ELGCRLVNFA RSRNVGMDFC VVASTPADGF QSLIEYLGAS SNNAGEALVI NCHMMPHRIP  240
DESAAGGMIS PRTMFAKALR SLEPSLVVIV DEEADFTASD VVTRLRAAFN YMWIPFDAVE  300
TFLAVGSEER RRYEGAVMLD EHSAGWGMKR DEEDLVLTWK GHDVVFATAW VPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-301528083343Protein SHORT-ROOT
5b3h_B4e-301528029289Protein SHORT-ROOT
5b3h_E4e-301528029289Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020679482.10.0scarecrow-like protein 32
SwissprotQ9SN221e-121SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2I0VR920.0A0A2I0VR92_9ASPA; Scarecrow-like protein 32
STRINGXP_008775518.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-113GRAS family protein