PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_07040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 353aa MW: 38383.9 Da PI: 5.5234 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 205.8 | 2.4e-63 | 20 | 318 | 2 | 290 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 ++lL++cA+a++++d++laq+lL+ l+++a pdgd++qRl++ f++AL r +r +s+++ +p + + +l+a +l f +++P+++f++ +a PEQU_07040 20 EQLLVHCAHAIEANDATLAQQLLWVLHNIAPPDGDSNQRLTSAFLRALLLRASRAGSSISGPATPHHPQ---LPLRLSAISLagFIDLTPWHRFGFSAA 115 79****************************************************999999776666665...777777777778*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..e 190 N+aI + ++g +H +D+ ++++Q p+L++ LasRpegpp +R+T+v+ p + ++ e+g rL +fA++ +v ++f v++++ + + PEQU_07040 116 NSAIADVADGFPVLHLVDLT-THCMQIPTLIDVLASRPEGPPFVRLTVVSTPPEMcppptLDISVDELGCRLVNFARSRNVGMDFCVVASTPADGFqsL 213 *******************6.89****************************99889998778899**********************855544444112 PP GRAS 191 leeLrvkp...gEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +e L ++ gEal++n++++ hr++des++ + s+r+ + k+++sl+P +vv+v++ead ++++ ++r+ a++y++ fd++e+ l+ seer+ PEQU_07040 214 IEYLGASSnnaGEALVINCHMMPHRIPDESAAggMISPRTMFAKALRSLEPSLVVIVDEEADFTASDVVTRLRAAFNYMWIPFDAVETFLAVGSEERRR 312 77786666678*****************997633667************************************************************** PP GRAS 285 vErell 290 +E +++ PEQU_07040 313 YEGAVM 318 998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 34.615 | 1 | 353 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-61 | 20 | 318 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
SSPRPRTKSL KNLNNAACME QLLVHCAHAI EANDATLAQQ LLWVLHNIAP PDGDSNQRLT 60 SAFLRALLLR ASRAGSSISG PATPHHPQLP LRLSAISLAG FIDLTPWHRF GFSAANSAIA 120 DVADGFPVLH LVDLTTHCMQ IPTLIDVLAS RPEGPPFVRL TVVSTPPEMC PPPTLDISVD 180 ELGCRLVNFA RSRNVGMDFC VVASTPADGF QSLIEYLGAS SNNAGEALVI NCHMMPHRIP 240 DESAAGGMIS PRTMFAKALR SLEPSLVVIV DEEADFTASD VVTRLRAAFN YMWIPFDAVE 300 TFLAVGSEER RRYEGAVMLD EHSAGWGMKR DEEDLVLTWK GHDVVFATAW VPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 8e-30 | 15 | 280 | 83 | 343 | Protein SHORT-ROOT |
5b3h_B | 4e-30 | 15 | 280 | 29 | 289 | Protein SHORT-ROOT |
5b3h_E | 4e-30 | 15 | 280 | 29 | 289 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020679482.1 | 0.0 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-121 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A2I0VR92 | 0.0 | A0A2I0VR92_9ASPA; Scarecrow-like protein 32 | ||||
STRING | XP_008775518.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-113 | GRAS family protein |