PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 425aa MW: 44992.5 Da PI: 10.484 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.4 | 2.7e-34 | 129 | 208 | 1 | 66 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+ +akpai+ l+++ PEQU_06996 129 ATGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMINAKPAIDRLAQLppwrppspsppppaA 208 589**************************************************************988776643332220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-30 | 130 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.746 | 132 | 190 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MAKLFQSATT GIKRSKKKEK KPCSFRSGKH GKRKSSRAGR EGGGGRGGGV GGGAPGSKED 60 SDSAPPEPKR RRTRKRASPN PAASILPLPF LLFRLCLLIG EAAGRHEDRR PGGGGDIVEV 120 QGGGHIVRAT GRKDRHSKVC TAKGLRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLM 180 INAKPAIDRL AQLPPWRPPS PSPPPPAAAE KPLLSSETAD YASAYGFCSS SSLLPPSLDS 240 DSIADTIKSF FPMTAAASSS YHPAIGGSSS HIEDLSLSLQ SVQDPIFNHQ HNRSAPTHQP 300 IFACAAPLAF DAGSSAWPEP SHRAASWNLV QNQFLTQWGT LQSSNPPSIR AMVDPIALSS 360 ASGHQMQLAA FRPSSNSPAP AFRTAAGEAV GFSGYHVPAR LQGGEEEHGS GVPDAPPSAS 420 SASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-19 | 137 | 190 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-19 | 137 | 190 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 20 | KRSKKKEKK |
2 | 19 | 33 | KKPCSFRSGKHGKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020584719.1 | 0.0 | transcription factor PCF5-like | ||||
Swissprot | Q9MAH8 | 4e-69 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A1D6ZNH9 | 0.0 | A0A1D6ZNH9_PHAEQ; TCP transcription factor | ||||
STRING | XP_008793159.1 | 1e-85 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 3e-32 | TCP domain protein 10 |
Publications ? help Back to Top | |||
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