PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06996
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 425aa    MW: 44992.5 Da    PI: 10.484
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.7e-34129208166
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+ +akpai+ l+++               
  PEQU_06996 129 ATGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMINAKPAIDRLAQLppwrppspsppppaA 208
                 589**************************************************************988776643332220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-30130193IPR005333Transcription factor, TCP
PROSITE profilePS5136932.746132190IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAKLFQSATT GIKRSKKKEK KPCSFRSGKH GKRKSSRAGR EGGGGRGGGV GGGAPGSKED  60
SDSAPPEPKR RRTRKRASPN PAASILPLPF LLFRLCLLIG EAAGRHEDRR PGGGGDIVEV  120
QGGGHIVRAT GRKDRHSKVC TAKGLRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLM  180
INAKPAIDRL AQLPPWRPPS PSPPPPAAAE KPLLSSETAD YASAYGFCSS SSLLPPSLDS  240
DSIADTIKSF FPMTAAASSS YHPAIGGSSS HIEDLSLSLQ SVQDPIFNHQ HNRSAPTHQP  300
IFACAAPLAF DAGSSAWPEP SHRAASWNLV QNQFLTQWGT LQSSNPPSIR AMVDPIALSS  360
ASGHQMQLAA FRPSSNSPAP AFRTAAGEAV GFSGYHVPAR LQGGEEEHGS GVPDAPPSAS  420
SASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-19137190154Putative transcription factor PCF6
5zkt_B4e-19137190154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220KRSKKKEKK
21933KKPCSFRSGKHGKRK
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584719.10.0transcription factor PCF5-like
SwissprotQ9MAH84e-69TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A1D6ZNH90.0A0A1D6ZNH9_PHAEQ; TCP transcription factor
STRINGXP_008793159.11e-85(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.13e-32TCP domain protein 10
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]