PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22656.1 Da PI: 9.6031 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.6 | 2.5e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRrng+lKKA EL +LCdaev +i+fsst++ly+++s PEQU_06935 9 SRIDNTTTRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSSTDRLYDFAS 59 59***********************************************86 PP | |||||||
2 | K-box | 72.8 | 1e-24 | 97 | 181 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++q+e+a L+++++nLq++ R+l+G d++ L lkeLq Le+q+e+sl+ iR+kK+++l+++ + l +k ++++een++L kkl+ PEQU_06935 97 HLNWQKEAASLRQQLHNLQENYRQLMG-DVNGLGLKELQTLESQMETSLRVIRQKKDQVLIDEAQALHRKVDDMEEENMRLYKKLK 181 569************************.69*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.77E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-31 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.154 | 97 | 188 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.5E-23 | 97 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRGKIVMSR IDNTTTRQVT FSKRRNGLLK KARELAILCD AEVGLIVFSS TDRLYDFAST 60 SMKSVIERYS KVKEDHQLVM HSTSEIKNYQ TILFCAHLNW QKEAASLRQQ LHNLQENYRQ 120 LMGDVNGLGL KELQTLESQM ETSLRVIRQK KDQVLIDEAQ ALHRKVDDME EENMRLYKKL 180 KLSQQENMEL HLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 77 | 1 | 77 | MEF2C |
5f28_B | 2e-22 | 1 | 77 | 1 | 77 | MEF2C |
5f28_C | 2e-22 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 2e-22 | 1 | 77 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020584681.1 | 1e-126 | MADS-box transcription factor 23-like isoform X3 | ||||
Swissprot | Q6EP49 | 3e-82 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2I0WQP2 | 5e-94 | A0A2I0WQP2_9ASPA; MADS-box transcription factor 27 | ||||
STRING | XP_008800745.1 | 4e-85 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-76 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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