PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32359.5 Da PI: 6.5989 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+ ++++ G g+W++ ++ g+ R++k+c++rw +yl PEQU_06600 16 KGSWTLEEDRRLIAYIHKNGYGNWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l PEQU_06600 69 RGNFTKEEEDTIINLHELLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.707 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.19E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.003 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRGRAPCCQ KVGLNKGSWT LEEDRRLIAY IHKNGYGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTKEEEDTI INLHELLGNK WSKIAACLPG RTDNEIKNVW NTHLKKHLKL 120 KTPTPPPPPL PTSMTKAHED SLSPTSAYTI SHETSSSSTN GLEMIPIEPH FYMLDILGDV 180 SMSTPSSLMT TTTNHTNNNL EIPTKQCQQW LADLEIELGL YVDGDDDSDE ITKRVEVMVR 240 EGGDPVRNYF HREASSPSTI DQVDFNSLNS LSWTKFVDFE LNESTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571899.1 | 0.0 | transcription factor MYB6-like | ||||
TrEMBL | A0A455LAA5 | 1e-114 | A0A455LAA5_9ASPA; Myb-related protein Zm1-like protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 2e-62 | myb domain protein 58 |