PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 97aa MW: 11325.8 Da PI: 6.3808 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.8 | 3.5e-14 | 1 | 57 | 45 | 101 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +l++lp ++r +a+++++ eA++r++dPvyG+++ i lq++++++++ela++k+++ PEQU_06547 1 MLQQLPLHDRAQAADAIATEAHWRVQDPVYGCTERIVCLQHEISKAQNELAVMKAQI 57 799*************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.589 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-12 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MLQQLPLHDR AQAADAIATE AHWRVQDPVY GCTERIVCLQ HEISKAQNEL AVMKAQIAIH 60 IAHHEKQQHS EAQYYQCYLK DNDSFVPYWP NLRPDFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571888.1 | 2e-67 | LOB domain-containing protein 24-like | ||||
TrEMBL | A0A2I0W0U9 | 1e-28 | A0A2I0W0U9_9ASPA; LOB domain-containing protein 12 | ||||
STRING | XP_008801576.1 | 5e-17 | (Phoenix dactylifera) | ||||
STRING | Sb07g026800.1 | 8e-17 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27534 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-15 | LOB domain-containing protein 24 |