PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20553.6 Da PI: 9.4121 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA ELS+LCd+eva+ii+s++gkl e++s PEQU_06409 9 KRIENKINRQVTFAKRRNGLLKKARELSILCDVEVALIIYSNHGKLSEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 69.5 | 1e-23 | 84 | 158 | 9 | 83 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 e++ + +q e+ Lk+ +e Lqr+qR+l+GedL+ L ++L qLe+qL+ sl +iR +K++++++q+ +lq+k PEQU_06409 84 SRETQIQGSQMEYITLKSHVEALQRSQRNLMGEDLGLLGRNDLDQLERQLNASLAQIRFTKTQYMHDQLCDLQQK 158 578899*******************************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.908 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.27E-41 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 8.37E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-20 | 83 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.446 | 89 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FAKRRNGLLK KARELSILCD VEVALIIYSN HGKLSEFCSN 60 SSMLQTLERY EKHNNNAPEL STTSRETQIQ GSQMEYITLK SHVEALQRSQ RNLMGEDLGL 120 LGRNDLDQLE RQLNASLAQI RFTKTQYMHD QLCDLQQKVY FRIEFVELFF FLIYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-21 | 77 | 158 | 3 | 86 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571917.1 | 1e-111 | agamous-like MADS-box protein AGL9 homolog | ||||
Swissprot | Q8LLR0 | 1e-72 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | F8S0F8 | 2e-76 | F8S0F8_DENNO; SEP3-like protein | ||||
STRING | XP_008801850.1 | 5e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3483 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 4e-71 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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