PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_06318

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

G2-like

Protein Properties

Length: 286aa MW: 31892.1 Da PI: 9.8682

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06318	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	4.9e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l++m++ gLtl+h+kSHLQkYRl PEQU_06318 29 KPRLRWTPDLHDRFVDAVAKLGGPDKATPKSVLRVMGMRGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.83	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	26	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-16	29	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-25	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	124	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MIESFVLMGR GYQYGATEAA AAVLSRDPKP RLRWTPDLHD RFVDAVAKLG GPDKATPKSV 60 LRVMGMRGLT LYHLKSHLQK YRLGRQARKE TGLDGIKDGK PSKASFNSSA SSIMSIGNTG 120 GREIQLTEEL RYQIEVQRKL HEQLEVQKKL QSRIEAQGKY LQAILEKAQK SLSFNNNNNN 180 NNMEAARAQL KDFNQALSGL MDNVNQFCVV KGAAELDKVA ASFSLNSSPT NSAFRLYQEG 240 EETQNLRFSS HRGESLLLDL NLKGNQDYFT GNMGSTDLDP QMIMQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574094.1	0.0	myb family transcription factor PHL11-like isoform X1
Refseq	XP_020574095.1	0.0	myb family transcription factor PHL11-like isoform X2
Swissprot	Q8LAJ7	2e-61	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2I0VUY5	1e-174	A0A2I0VUY5_9ASPA; Myb family transcription factor APL
STRING	XP_008800016.1	1e-100	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	5e-60	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]