PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17819.7 Da PI: 10.9918 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.1 | 1.5e-38 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C++dC+lap+fpa++p +f+nvh+lFG+sn+lk+lk++ ++ ++++m+s+++++++ra+dPv G++++il+l+ q+++l+ael+ + + PEQU_06169 27 ACAACKYQRRRCTSDCILAPHFPANNPLQFRNVHRLFGVSNILKILKRVAPQLHKETMTSIIMQSNIRAQDPVGGCYRFILDLKFQIDRLSAELQFVLN 125 7*********************************************************************************************98876 PP DUF260 100 e 100 + PEQU_06169 126 Q 126 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 28 | No hit | No description |
PROSITE profile | PS50891 | 23.65 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-37 | 27 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTKTHKSSSS TTTTTTTTTS TSTSTSACAA CKYQRRRCTS DCILAPHFPA NNPLQFRNVH 60 RLFGVSNILK ILKRVAPQLH KETMTSIIMQ SNIRAQDPVG GCYRFILDLK FQIDRLSAEL 120 QFVLNQLAFY RPQVRPKSRI CNVLFRLKNS IFQKIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-26 | 17 | 130 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-26 | 17 | 130 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574048.1 | 8e-94 | LOB domain-containing protein 7-like | ||||
Swissprot | Q9LRW1 | 9e-35 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2I0W608 | 4e-49 | A0A2I0W608_9ASPA; LOB domain-containing protein 22 | ||||
STRING | XP_008779803.1 | 9e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-36 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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