PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 28360 Da PI: 7.1415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.6 | 2.4e-53 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhP+deel+++yL+kkv ++k+++ ++ evd++ +ePw+Lp+++k + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v+++ +++ PEQU_06088 10 LPPGFRFHPSDEELICHYLHKKVVNEKVSE-GTLVEVDLHALEPWELPEMAKLSPNEWYFFSFRDRKYATGSRTNRATRSGYWKATGKDRTVHNHrTHS 107 79*************************999.88***************88888999*************************************985677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 +vg++ktLvfy+grap+g kt+Wvmhe+rle PEQU_06088 108 TVGMRKTLVFYHGRAPNGLKTNWVMHEFRLE 138 8***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.279 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-29 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGLREVESTL PPGFRFHPSD EELICHYLHK KVVNEKVSEG TLVEVDLHAL EPWELPEMAK 60 LSPNEWYFFS FRDRKYATGS RTNRATRSGY WKATGKDRTV HNHRTHSTVG MRKTLVFYHG 120 RAPNGLKTNW VMHEFRLETP HSPPKEDWVL CRVFHKRKVE GVKESAMNGY NNTTSPTLEY 180 LSPTFSSDQL PLGSQEMNWC SLSTSPCKKN DHDSNFIQNL MDCNGIVSLE QLGFSLEEMN 240 NDIYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3ulx_A | 2e-52 | 1 | 157 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574015.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 9e-66 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2I0XD99 | 1e-138 | A0A2I0XD99_9ASPA; NAC domain-containing protein 100 | ||||
STRING | XP_008810507.1 | 1e-101 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 7e-80 | NAC domain containing protein 74 |