PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_05903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32458.7 Da PI: 5.441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl PEQU_05903 16 KGSWTPQEDIRLISYIRKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l PEQU_05903 69 RGNFTKEEEDTIINLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.819 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.54E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.044 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.78E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRGRAPCCQ KIGLHKGSWT PQEDIRLISY IRKHGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTKEEEDTI INLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVKH 120 ENYPTQSPEI IAAQPEAANK IVIPTEPQHD MWDILDSVLS PNLSPLAAPP VDDDDILIDI 180 PIEPELWSDA ANVGSVGEEA GMAGGRGLVD EGKNWLAYLE EELELFNEAE DERRMELVSM 240 EDGDLMRGYF HKRNSSPSSS SSSPSIPELV DFDCIDTWSL DKLSSRVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574634.1 | 0.0 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 2e-74 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A2I0W3H2 | 1e-121 | A0A2I0W3H2_9ASPA; Myb-related protein Zm1 | ||||
STRING | XP_008776690.1 | 4e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-66 | myb domain protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|