PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_05751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 127aa MW: 13720.7 Da PI: 9.8539 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 85.8 | 4.5e-27 | 20 | 108 | 16 | 97 |
NF-YC 16 fknhelPlarikkilkad.....edvk.misaeaPvllskacelfileltlrswlhae.enkrrtlkksdiaaavtrtdifdflvdivp 97 + h+lPl+rikki+k d k mis eaP++lsk celfi elt rsw a + kr+tl + d+aaav++td fdflv +v PEQU_05751 20 IGPHSLPLTRIKKIMKNSsggnaSDAKmMISVEAPIVLSKVCELFIEELTRRSWAAAAiHGKRKTLLHDDVAAAVNQTDNFDFLVGMVS 108 5679************75222223444389************************9764389***********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.83E-21 | 18 | 103 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-15 | 24 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.4E-25 | 25 | 107 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MRRPGVYSGM FTGSDASSRI GPHSLPLTRI KKIMKNSSGG NASDAKMMIS VEAPIVLSKV 60 CELFIEELTR RSWAAAAIHG KRKTLLHDDV AAAVNQTDNF DFLVGMVSLS GRRRGAEEDS 120 DGVVTNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-23 | 11 | 107 | 4 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574801.1 | 2e-89 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 2e-21 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q9SMP0 | 2e-21 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9ZVL3 | 1e-21 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A2I0WVB2 | 8e-79 | A0A2I0WVB2_9ASPA; Nuclear transcription factor Y subunit C-9 | ||||
STRING | Lus10008013 | 4e-36 | (Linum usitatissimum) | ||||
STRING | XP_004300774.1 | 4e-36 | (Fragaria vesca) | ||||
STRING | XP_010053291.1 | 4e-36 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 6e-24 | nuclear factor Y, subunit C3 |