PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05683
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 292aa    MW: 33423.7 Da    PI: 8.6311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05683genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++++G g +W + +++ g++R++k+c++rw++yl
       PEQU_05683 14 KGPWSPEEDNKLKDYIEKYGIGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79******************999************************97 PP
2Myb_DNA-binding40.75.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++ +Ed ++  +++  G++ W+ Ia++++ gRt++++k++w++
       PEQU_05683  69 GNFSDDEDRIICSLFASIGSR-WSIIASHLP-GRTDNDIKNYWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.002962IPR017930Myb domain
SuperFamilySSF466895.59E-2811109IPR009057Homeodomain-like
SMARTSM007175.2E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-251569IPR009057Homeodomain-like
CDDcd001671.67E-91662No hitNo description
PROSITE profilePS5129422.5963117IPR017930Myb domain
SMARTSM007171.7E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1169111IPR001005SANT/Myb domain
CDDcd001671.32E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDNKLKDYIE KYGIGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGN FSDDEDRIIC SLFASIGSRW SIIASHLPGR TDNDIKNYWN TKLKKKLFGI  120
SPTQKKLSHQ LKQQNQQLQP SIDHNILHPS SSTSLLSHQQ HFPSKFFNTN SSFPSVEMWP  180
SHHYQTELNS SKLLIFGGDQ LNCSSSEICF GRSTMEFETE NYFQFNEIGD QKLLLGGISG  240
EGEADAPLIN SGYEEIKLVI NPKNLNYFDD PRRASETIGN NFKTQERVMY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574766.10.0transcription factor MYB36-like
RefseqXP_020574767.10.0transcription factor MYB36-like
TrEMBLA0A2I0VUR01e-179A0A2I0VUR0_9ASPA; Transcription factor RAX2
STRINGPGSC0003DMT4000050853e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36