PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05643
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 295aa    MW: 33680.2 Da    PI: 9.1531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05643genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++++G g +W + +++ g++R++k+c++rw++yl
       PEQU_05643 14 KGPWSPEEDNKLKDYIEKYGIGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79******************999************************97 PP
2Myb_DNA-binding38.13.5e-1269117246
                      SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 
                      g+++ +Ed ++  +++  G++     +W+ Ia++++ gRt++++k++w++
       PEQU_05643  69 GNFSDDEDRIICSLFASIGSRflskcRWSIIASHLP-GRTDNDIKNYWNT 117
                      89**********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.306966IPR017930Myb domain
SuperFamilySSF466891.91E-2511115IPR009057Homeodomain-like
SMARTSM007175.2E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-251569IPR009057Homeodomain-like
CDDcd001672.56E-91662No hitNo description
PROSITE profilePS5129414.34867123IPR017930Myb domain
SMARTSM007171.2E-1067121IPR001005SANT/Myb domain
PfamPF002499.1E-1169117IPR001005SANT/Myb domain
CDDcd001675.31E-870119No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2170123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDNKLKDYIE KYGIGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGN FSDDEDRIIC SLFASIGSRF LSKCRWSIIA SHLPGRTDND IKNYWNTKLK  120
KKLFGISPTQ RKSSHQLKQQ NQQLQPTLDH NILHSSSTTS LLSHHQYFPS KFYNTSSSSP  180
LAEMWLSHHH QTELNSSKLL IFGGDQLNGS FSEICFGRPT MEFETENYFL FNKIGDQKLL  240
LGGNLGEAEA PLINYGYEEI KQVISPKNLN FDDPKRASEA IGNSFKTQES VMYYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141237108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574551.10.0transcription factor RAX2-like
TrEMBLA0A455LAC41e-176A0A455LAC4_9ASPA; Transcription factor RAX2-like protein
STRINGGLYMA13G20510.17e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-74myb domain protein 36