PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05614
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 270aa    MW: 29223 Da    PI: 5.0461
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05614genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS210.87.4e-651246120374
        GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL.rvkpgEalaVnlvlqlhrlld 215
                 +qGlQWp L++ LasRp++  s+RiTg+g+    +++ le+tg+rLa+fA++l++pf+f++l + +++dl  ++  + + +p Ea++V++    h l+d
  PEQU_05614   1 MQGLQWPGLFHILASRPRPIESIRITGIGP----DSDLLEATGRRLADFAASLNLPFQFTPL-EGKIADLatDFTPFcHRNPAEATVVHWTQ--HCLYD 92 
                 69****************************....9**************************7.5566666334555534555********99..77777 PP

        GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                  ++s         +++ sl+P++++vveq++ h +++ Fl rf+eal+yysalfd++  + +   eer  vEr +lg ei+n+va  g +r+ + + +e
  PEQU_05614  93 VTGSDIA----AAQFLSSLRPRLLTVVEQDLGHgSGGGFLGRFVEALHYYSALFDAIGDG-GGGGEERWEVERGVLGGEIKNIVAVGGPKRTGEVK-VE 185
                 7777777....66777899**************8888********************877.6888*************************998887.9* PP

        GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +W + l+++GF+pv+l  + a+qa+lll +v+++gy++ ee g l lgWkd +L+++SaWr
  PEQU_05614 186 RWGDELRRVGFRPVSLAGSPAAQASLLLGMVPWKGYTLAEEGGRLKLGWKDLSLLTASAWR 246
                 ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.5021226IPR005202Transcription factor GRAS
PfamPF035142.6E-621246IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQGLQWPGLF HILASRPRPI ESIRITGIGP DSDLLEATGR RLADFAASLN LPFQFTPLEG  60
KIADLATDFT PFCHRNPAEA TVVHWTQHCL YDVTGSDIAA AQFLSSLRPR LLTVVEQDLG  120
HGSGGGFLGR FVEALHYYSA LFDAIGDGGG GGEERWEVER GVLGGEIKNI VAVGGPKRTG  180
EVKVERWGDE LRRVGFRPVS LAGSPAAQAS LLLGMVPWKG YTLAEEGGRL KLGWKDLSLL  240
TASAWRPANI AGKEEDGGEE EWDRSEGISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-931247138380Protein SCARECROW
5b3h_A4e-931247137379Protein SCARECROW
5b3h_D4e-931247137379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589549.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-105SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2I0WSE81e-164A0A2I0WSE8_9ASPA; Scarecrow-like protein 23
STRINGMLOC_62589.11e-123(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-91GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]