PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_05554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 22325.8 Da PI: 9.1531 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1.1e-13 | 21 | 66 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +rW eEdel+ ++v+++G ++W+ + ++++ + R++ +c+ rw + PEQU_05554 21 KRWRSEEDELIRKYVEEYGDNDWRYVEQRFPdLSRSRTSCRKRWKS 66 69******************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.77 | 15 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-16 | 17 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-16 | 22 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.55E-8 | 22 | 65 | No hit | No description |
Pfam | PF13921 | 3.1E-13 | 23 | 83 | No hit | No description |
PROSITE profile | PS50090 | 5.181 | 69 | 125 | IPR017877 | Myb-like domain |
SMART | SM00717 | 27 | 73 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 78 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRRPRAKRNH DTESAQRRKH KRWRSEEDEL IRKYVEEYGD NDWRYVEQRF PDLSRSRTSC 60 RKRWKSALQS TVAQHPFSPE EKTRIRGLYR MLGGKWRQIK NVLWGDESPV KRTECDIRNN 120 INQILLEQSH DQHCSPTVHS IRSSSDIDND AWKHASDMGN INQKYEETSS VGDPSLDVSL 180 PIPVSGEEH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589416.1 | 1e-139 | transcription factor MYB114-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26950.1 | 2e-15 | myb domain protein 104 |