PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05056
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 593aa    MW: 65816.3 Da    PI: 6.1015
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05056genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.82.3e-7382231218
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L +cA a+ +++++ a++l+a+l++++s +g+p++Rl ay++e+L arl++s+s +ykal+++e +   sse l+++++++ev+P++kf+++ aN
  PEQU_05056   8 LRQVLAACAYAIGENNFTTAKWLIAELKQMVSVSGEPIERLGAYLLEGLVARLSSSGSLIYKALKCREPT---SSEFLSYMHILYEVCPYFKFGYMSAN 103
                 6899*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI eav++e+r+HiiD++i qG+QW++L+qaLasRp+gpp++R+Tg++++ +   +   le +g+rL+++Ae+++vpfef++ +a +  ++ele+L +
  PEQU_05056 104 GAIAEAVKNEDRIHIIDLQIAQGTQWVTLIQALASRPGGPPHVRVTGFDDSLNAyaRGGGLEIVGQRLSRLAESCRVPFEFHP-AAMSGCEIELEDLGI 201
                 **************************************************877788999************************.899999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesv 218
                 +pgEalaVnl++qlh+++de++
  PEQU_05056 202 RPGEALAVNLAFQLHHIPDEDL 223
                 ******************9986 PP
2GRAS447.58.9e-1372235931374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L +cA a+ +++++ a++l+a+l++++s +g+p++Rl ay++e+L arl++s+s +ykal+++e +   sse l+++++++ev+P++kf+++ aN
  PEQU_05056 223 LRQVLAACAYAIGENNFTTAKWLIAELKQMVSVSGEPIERLGAYLLEGLVARLSSSGSLIYKALKCREPT---SSEFLSYMHILYEVCPYFKFGYMSAN 318
                 6899*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI eav++e+r+HiiD++i qG+QW++L+qaLasRp+gpp++R+Tg++++ +   +   le +g+rL+++Ae+++vpfef++ +a +  ++ele+L +
  PEQU_05056 319 GAIAEAVKNEDRIHIIDLQIAQGTQWVTLIQALASRPGGPPHVRVTGFDDSLNAyaRGGGLEIVGQRLSRLAESCRVPFEFHP-AAMSGCEIELEDLGI 416
                 **************************************************877788999************************.899999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVnl++qlh+++desvs++++rd++L++vksl P+vv++veqe++ n++ F+ rf+e+l+yy+a+f+s++++lpre++eri+vE+++l+r+iv
  PEQU_05056 417 RPGEALAVNLAFQLHHIPDESVSTTNHRDRLLRFVKSLAPTVVTLVEQESNANTAAFFPRFIETLDYYTAIFESIDVTLPRENKERINVEQQCLARDIV 515
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg+er+erhe  +kW++r+++aGF ++pls+ ++ ++k+ll +++++ y++ee +g+l+lgW++r+Lv+ SaWr
  PEQU_05056 516 NIIACEGKERVERHEVHGKWKARFRMAGFAQYPLSSLVNGTIKSLLGNYSDK-YSLEEVDGALYLGWRHRALVVSSAWR 593
                 **************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.2711201IPR005202Transcription factor GRAS
PROSITE profilePS5098568.07197574IPR005202Transcription factor GRAS
PfamPF035143.1E-134223593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MEIPNRDLRQ VLAACAYAIG ENNFTTAKWL IAELKQMVSV SGEPIERLGA YLLEGLVARL  60
SSSGSLIYKA LKCREPTSSE FLSYMHILYE VCPYFKFGYM SANGAIAEAV KNEDRIHIID  120
LQIAQGTQWV TLIQALASRP GGPPHVRVTG FDDSLNAYAR GGGLEIVGQR LSRLAESCRV  180
PFEFHPAAMS GCEIELEDLG IRPGEALAVN LAFQLHHIPD EDLRQVLAAC AYAIGENNFT  240
TAKWLIAELK QMVSVSGEPI ERLGAYLLEG LVARLSSSGS LIYKALKCRE PTSSEFLSYM  300
HILYEVCPYF KFGYMSANGA IAEAVKNEDR IHIIDLQIAQ GTQWVTLIQA LASRPGGPPH  360
VRVTGFDDSL NAYARGGGLE IVGQRLSRLA ESCRVPFEFH PAAMSGCEIE LEDLGIRPGE  420
ALAVNLAFQL HHIPDESVST TNHRDRLLRF VKSLAPTVVT LVEQESNANT AAFFPRFIET  480
LDYYTAIFES IDVTLPRENK ERINVEQQCL ARDIVNIIAC EGKERVERHE VHGKWKARFR  540
MAGFAQYPLS SLVNGTIKSL LGNYSDKYSL EEVDGALYLG WRHRALVVSS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-671559225377Protein SCARECROW
5b3h_D6e-671559225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590644.10.0scarecrow-like protein 21
RefseqXP_020595376.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A3G2CI250.0A0A3G2CI25_CYMEN; Scarecrow-like protein 21-like transcript variant X1
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]