PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05034
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 325aa    MW: 37066.3 Da    PI: 5.8624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05034genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-142673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++lv++    G g+W+ +ar  g+ R++k+c++rw +yl
       PEQU_05034 26 KGLWSPEEDDKLVHYMLSNGQGCWTDVARNAGLQRCGKSCRLRWINYL 73
                     678*******************************************97 PP
2Myb_DNA-binding50.54.7e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
       PEQU_05034  79 RGAFSIEEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5442373IPR017930Myb domain
SuperFamilySSF466891.25E-2724120IPR009057Homeodomain-like
SMARTSM007171.1E-102575IPR001005SANT/Myb domain
PfamPF002492.4E-132673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-212780IPR009057Homeodomain-like
CDDcd001671.19E-82973No hitNo description
PROSITE profilePS5129425.51574128IPR017930Myb domain
SMARTSM007173.1E-1478126IPR001005SANT/Myb domain
PfamPF002493.2E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2581129IPR009057Homeodomain-like
CDDcd001673.90E-1085121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMRRPDTSGP PPPSKHGETG VYKLRKGLWS PEEDDKLVHY MLSNGQGCWT DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSIEEEELI VHLHSILGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN SLQPSPSNHD KKSPPDANKE LIKEDIMFMR MNSSASSSSS SMQAFPLNTN  180
YNLFPFPGTT ANDCFINMTS SLLHDNGMYD DGNAHDFMAM DGGLMVEEGY DHYFVPPLES  240
ASQEENGANL DYAYHNYSRN IGEINSNMIN HNDHNDTKNS IKDNHFVASH KMWEEGYESM  300
RVGEWSLEDL IEDVSHFPLL GFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28201281108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590698.10.0transcription factor MYB46-like
TrEMBLA0A2I0W3231e-179A0A2I0W323_9ASPA; Transcription factor MYB46
STRINGXP_008775367.16e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.16e-72myb domain protein 83