PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04780
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 473aa    MW: 51632.9 Da    PI: 7.581
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04780genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.7e-41172248278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 CqvegC+ dl  ak+yhr+h+vCe hsk+p+v+++g+e+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+
  PEQU_04780 172 CQVEGCNIDLIGAKDYHRKHRVCENHSKSPKVIIAGQERRFCQQCSRFHDLSEFDQKKRSCRKRLSEHNSRRRKPQP 248
                 **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-33164233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.684169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-38170251IPR004333Transcription factor, SBP-box
PfamPF031101.2E-31172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDWNLKAPLQ WEWENLALFS GKESEITKFT TQAEWRTEDG GVISNGSVYS SGSGTSSGSD  60
LGNGSSRSSV SASVGSSSKV GVFTSELNFE ALEGLHQNPN KNNEPVTGED AETSPAIVRR  120
SGAGEPQLGL KLGKRTYFED FGRANVKTSI TQEDTSVKKA RVSHQATQNT YCQVEGCNID  180
LIGAKDYHRK HRVCENHSKS PKVIIAGQER RFCQQCSRFH DLSEFDQKKR SCRKRLSEHN  240
SRRRKPQPEA ISFNSSVLPS SFYANGQQMN FFLSRGPVND TRPSASTLWE KSSGFSLSTS  300
EGTWPKPTKA GVDGALHLPF LDFSDNFPTS HHGFNRTMPF KGTTAEVLNQ GLEASASASN  360
FNGAPPDLRS ALSLLSNDSC GPCNAGQSHM IIAKTNPTAA TASHPSPVQA SNSLLECWQD  420
DRSLTEQALA FNFSSNGSQF QDFHLSKAPF DSPLFEGNQV FSKSDGHFLG FKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261722451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KKRSCRKRLSEHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578542.10.0squamosa promoter-binding-like protein 12 isoform X2
SwissprotA2YGR51e-100SPL12_ORYSI; Squamosa promoter-binding-like protein 12
SwissprotQ5Z8181e-100SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLA0A2I0W9G50.0A0A2I0W9G5_9ASPA; Squamosa promoter-binding-like protein 12
STRINGXP_008809089.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-61squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]