PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 348aa MW: 37255.9 Da PI: 6.35 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.8e-07 | 17 | 65 | 3 | 42 |
zf-B_box 3 erkCpeHeeke...lqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ ++ ++lfC+ + +lC +C H+ H++v+l PEQU_04684 17 ARSCDACKGATvasAILFCRADAAFLCGTCDARVHSAnklasrHERVSL 65 578*****533344*********************66889999998875 PP | |||||||
2 | zf-B_box | 23.8 | 9.5e-08 | 64 | 107 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ ++ C+ + lC +C +H+ H ++p PEQU_04684 64 SLCAVCEQAPAAVTCKADAAALCSSCDADIHSAnplasrHHRIP 107 68*****************************6688999966665 PP | |||||||
3 | CCT | 69.7 | 7.6e-24 | 272 | 315 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ PEQU_04684 272 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 315 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.1E-13 | 15 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.783 | 15 | 65 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.52E-5 | 18 | 65 | No hit | No description |
Pfam | PF00643 | 8.0E-6 | 18 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.0E-6 | 64 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.21E-7 | 65 | 108 | No hit | No description |
SMART | SM00336 | 2.8E-7 | 66 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.7E-18 | 272 | 314 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.906 | 272 | 314 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGFAGAESPG TFWSLRARSC DACKGATVAS AILFCRADAA FLCGTCDARV HSANKLASRH 60 ERVSLCAVCE QAPAAVTCKA DAAALCSSCD ADIHSANPLA SRHHRIPIVP FFDSPSANSS 120 AAGDGDPDPE SFFSGDAEAE ASWVLQDPPK EAQLEMPKSA NCFFSELNPF LDLEYASSVD 180 AGMYQSDSVV PAGAGIPASF MLDFAKSKPA YSGYNISPSV SFYRDCRINF ICSMSSSEFG 240 VVPDGEGCAM ADVSTCGGGR SSSVTAVSMM DREARVMRYR EKRKNRRFEK TIRYASRKAY 300 AETRPRIKGR FAKRTEMEAE FDRIYLSAAA ATAAFMAADP GFGVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM439640 | 0.0 | HM439640.1 Phalaenopsis hybrid cultivar CONSTANS-like 2 protein (COL2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578720.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9FHH8 | 2e-83 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | K9K3D1 | 0.0 | K9K3D1_9ASPA; CONSTANS-like 2 protein | ||||
STRING | XP_008789696.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-72 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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