PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04645
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 358aa    MW: 40547.1 Da    PI: 9.1614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04645genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-1646105155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  PEQU_04645  46 SIYRGVTRHRWTGRYEAHLWDkNCWNHsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWG 105
                 57*******************999944556446*************************98 PP
2AP252.21.5e-16148199155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  PEQU_04645 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 199
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1746115IPR016177DNA-binding domain
CDDcd000186.32E-1146115No hitNo description
PfamPF008471.4E-1146105IPR001471AP2/ERF domain
PROSITE profilePS5103220.58747113IPR001471AP2/ERF domain
SMARTSM003805.8E-2747119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1647114IPR001471AP2/ERF domain
PRINTSPR003674.8E-64859IPR001471AP2/ERF domain
CDDcd000181.58E-14148209No hitNo description
PfamPF008471.3E-11148199IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17148209IPR016177DNA-binding domain
SMARTSM003801.3E-25149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-17149208IPR001471AP2/ERF domain
PROSITE profilePS5103218.241149207IPR001471AP2/ERF domain
PRINTSPR003674.8E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAKKKQSTPA STSVTNNCNR GNLNGIEKVR RTRKSVPRES PSRRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW NHSQNKKGRQ VYLGAYDDEE AAARAYDLAA LKYWGQDTIL NFPLSNYTAE  120
VKEMEAQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAIAY DIAAIEYRGL NAVTNFDLSR YIKPIRPNHE DNKSITTAHS INSSPTSNSI  240
HFNSLLTFPQ QQQSHEPVIT PLSQTKGAAS TPSSALELLF RSSKFKEMLE NTSSAATNMV  300
PLLRESDEKS SSQCSFPDDV QTYFKCHDNE SFVVEGADTI FGELNAFEAP IFHCEFDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578499.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-112AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9731e-157A0A2K2B973_POPTR; Uncharacterized protein
STRINGGorai.009G008800.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]