PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04528
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 348aa    MW: 39276.9 Da    PI: 7.9758
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04528genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091642011954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  PEQU_04528 164 FEHflHPYPNDSEKLMLARQTGLTRSQISNWFINARVR 201
                 665559******************************88 PP
2BELL87.41.5e-2840981472
        BELL 14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                s   +Vd+rYkqy +++q+v ssF+a+ag g+akpYtslAl++iSrhFr+L+d i +qi
  PEQU_04528 40 STPSQVDRRYKQYFNEMQIVDSSFDAIAGSGAAKPYTSLALQTISRHFRSLRDTIGSQI 98
                45579**************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-6496IPR006563POX domain
PfamPF075261.2E-234294IPR006563POX domain
PROSITE profilePS5007112.536142205IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-28144218IPR009057Homeodomain-like
CDDcd000861.16E-12145206No hitNo description
SMARTSM003892.0E-10145209IPR001356Homeobox domain
SuperFamilySSF466891.2E-17146210IPR009057Homeodomain-like
PfamPF059205.1E-18162201IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSPTANSSTR RGLIFLGYTI CQYIYSVAFS VDYLSNLLSS TPSQVDRRYK QYFNEMQIVD  60
SSFDAIAGSG AAKPYTSLAL QTISRHFRSL RDTIGSQIRS SRKLLGEQDG SNGRGCGISS  120
LRNIDQHIRQ QKVMQQLGVM PQHAWRPQRG LPENSVSILR AWLFEHFLHP YPNDSEKLML  180
ARQTGLTRSQ ISNWFINARV RLWKPMVEDI YKEEFGENNT NSNSSSEMAA IYIDELCKNA  240
QENQQSSPNE RCHTNQSSQL NQISQSNAAT AAQVPGFQTE PMNQRLLTYM VNELEMYNNG  300
GRVSLTLGLQ HSDVQEGFLS SRGADEEMYS TRTSIGFGSS QLLNYFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16151208562Homeobox protein Meis2
3k2a_B2e-16151208562Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578475.10.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_020578477.10.0BEL1-like homeodomain protein 7 isoform X1
SwissprotQ9SIW11e-102BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2I0VPX01e-170A0A2I0VPX0_9ASPA; BEL1-like homeodomain protein 6
STRINGXP_008812787.11e-111(Phoenix dactylifera)
STRINGGSMUA_Achr9P21580_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-100BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]