PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04461
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 432aa    MW: 47217 Da    PI: 7.0466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04461genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.45.8e-100494092374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAe vs ++l+ a +lL ++s l+sp g++ +R+aayf  AL+ar+++s  ++y+ l+ ++ + + + +   +++ ++ +sP+lkfsh+t Nq
  PEQU_04461  49 LTLLLHCAESVSLDNLSYALTLLPEISSLSSPFGSSPERVAAYFSDALHARILSSFLGTYSPLSLKPLTLSLTRRISRSFQSLNSISPLLKFSHFTSNQ 147
                 579*****************************************************************9999999999********************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele.eLrvkp 198
                 aI +a++ ++rvHi+D+di +GlQWp L++ L+sR+++  s+RiTg+g+     +e l++tg+ La+fA+ l++pf+f+++  k ++  +l   L ++p
  PEQU_04461 148 AIFQALAYHDRVHILDLDIIHGLQWPGLFHILSSRSRPIQSIRITGIGP----AAEILHSTGRTLADFAAGLRIPFDFTPIEGKITDLTDLTpFLPTDP 242
                 *************************************************....99*************************8555333334441479999 PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                  Ea++V++    h ++d ++s        ++++ks++P++v+vveq+++h +++Fl rf+eal+yysalfd++  + +   eer  vEr +lg ei+n+
  PEQU_04461 243 SEATVVHWTQ--HCVYDVTGSDLA----AVQILKSIRPHIVTVVEQDLSH-GGDFLCRFVEALHYYSALFDAIGDG-GGGGEERWEVERGVLGGEIRNI 333
                 ********99..778877777777....9*********************.679*******************877.6888****************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 va  g +r+ + + +e+W + l+++GF pv+l  + a+qa+lll +v+++gy++ ee gsl lgWkd +L+++SaWr
  PEQU_04461 334 VAVGGPKRTGEVR-VERWGDELRRVGFLPVSLAGSPAEQARLLLGMVPWKGYTLVEEGGSLKLGWKDLSLLTASAWR 409
                 *******998887.9*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.86322389IPR005202Transcription factor GRAS
PfamPF035142.0E-9749409IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MKPSKRPSPS STSDEISAGK RPRHSPXXXX XXXXXXXXXX XXSRILRLLT LLLHCAESVS  60
LDNLSYALTL LPEISSLSSP FGSSPERVAA YFSDALHARI LSSFLGTYSP LSLKPLTLSL  120
TRRISRSFQS LNSISPLLKF SHFTSNQAIF QALAYHDRVH ILDLDIIHGL QWPGLFHILS  180
SRSRPIQSIR ITGIGPAAEI LHSTGRTLAD FAAGLRIPFD FTPIEGKITD LTDLTPFLPT  240
DPSEATVVHW TQHCVYDVTG SDLAAVQILK SIRPHIVTVV EQDLSHGGDF LCRFVEALHY  300
YSALFDAIGD GGGGGEERWE VERGVLGGEI RNIVAVGGPK RTGEVRVERW GDELRRVGFL  360
PVSLAGSPAE QARLLLGMVP WKGYTLVEEG GSLKLGWKDL SLLTASAWRP AAVAEEEGGG  420
AEKRVISESL AM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1345441024379Protein SCARECROW
5b3h_D1e-1345441024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578472.10.0scarecrow-like protein 23, partial
SwissprotQ9FHZ11e-153SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2I0W3470.0A0A2I0W347_9ASPA; Scarecrow-like protein 23
STRINGXP_008786112.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-114GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]