PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRF | ||||||||
Protein Properties | Length: 326aa MW: 36835.8 Da PI: 8.6581 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.1 | 7.2e-24 | 72 | 116 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hr+r+rsrk++e+ PEQU_04121 72 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRSRNRSRKHVES 116 79****************************************996 PP | |||||||
2 | QLQ | 63.5 | 5.6e-22 | 5 | 41 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FTaaQ+ +L++Q+l++KyL+a++PvPp+Ll +iq+ PEQU_04121 5 QPFTAAQWRELEHQALIFKYLVAGVPVPPDLLIPIQR 41 69*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-13 | 5 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.066 | 6 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.1E-16 | 6 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.555 | 72 | 116 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.7E-20 | 73 | 115 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGWRQPFTAA QWRELEHQAL IFKYLVAGVP VPPDLLIPIQ RSLEALPSRF YHHYTANSSP 60 VGYFSYYGKK LDPEPGRCRR TDGKKWRCSK DAHPDSKYCE RHMHRSRNRS RKHVESKSGV 120 SPQQSQSHLS SSSTSASHVA LGSSGNFENI AMQSAMAAAG ASNSQHYGMN GKDYRYLHGA 180 KIDMDKHNFF SEYPRNTQTG LSINSSPNNS WGLISKGKDS NLYGHYSSQL HEMQNLNEET 240 MRSVPKHQEQ LNSYFKSDFG LTEPGKLEFQ GLGTAFNEWS KARESWLDLK DEHSERNTFS 300 ATQLSMSIPM ASSDFSTTTC CSPNDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020570761.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q6AWY6 | 1e-83 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A2I0VI42 | 0.0 | A0A2I0VI42_9ASPA; Growth-regulating factor 5 | ||||
STRING | XP_008813471.1 | 1e-107 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-44 | growth-regulating factor 5 |