PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_04053

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

BES1

Protein Properties

Length: 641aa MW: 73045.6 Da PI: 6.33

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_04053	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	89.1	1.1e-27	1	136	29	142
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr..............kgskpleeaeaagssasaspesslq.sslkssalaspvesysa 112 ++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+v+ DGttyr + p++ +++ ++ s+es+l+ +s+k+ a+++ ++s+++ PEQU_04053 1 MLAGLRQHGNFPLPARADMNDVLAALAREAGWTVDLDGTTYRtsptpppppilpphAAAAPPHPPSQLAPFQVHSIESPLSaTSMKNRAIKASLDSQQS 99 79**************************************555555555555443444445666777788899999999999*********** PP DUF822 113 spksssfpspssldsislasa.......asllpvlsv 142 +k ++ +s+sslds+ +a+ ++++p+ s PEQU_04053 100 FLKIDEGLSSSSLDSVVIAERdiknnkfNNSSPINSS 136 ****************9886655555444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.2E-29	1	135	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.69E-151	201	638	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.9E-167	204	638	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.3E-79	226	610	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	241	255	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	262	280	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	284	305	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	377	399	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	450	469	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	484	500	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	501	512	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	519	542	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.5E-50	558	580	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MLAGLRQHGN FPLPARADMN DVLAALAREA GWTVDLDGTT YRTSPTPPPP PILPPHAAAA 60 PPHPPSQLAP FQVHSIESPL SATSMKNRAI KASLDSQQSF LKIDEGLSSS SLDSVVIAER 120 DIKNNKFNNS SPINSSECVD AEQKAVPNKL QFNTTFRSSI YPSFFMHCHS LNDITLPTKF 180 SFLFMKLLQL MQGALEQDGD FVGTPYIPVY IMLAPNFIND YCQLVDPEAV RRELEHLKAL 240 HIDGVVVDCW WGIVEGWSPH KYQWSGYRDL FNIVREFKLK LQVVLAFHEY GGKESGDMVI 300 PLPKWILEIG QDNQDIFFTD HEGRRNTECL SWGIDKERVL KGRTGIEVYF DFMRSFRMEF 360 DDLFKEDLIS AIEIGLGASG ELRFPSHSEK IGWRYPGIGE FQCYDKYMQQ NLRKAARIRG 420 HSFWARGPNN AGHYNSRPHE TGFFCDRGEY DSYYGRFFLR WYAQTLFDHA DQVLSLASLA 480 FEGTKLVVKI PSIYWWYRTS SHAAELTAGY YNPTNQDGYS PVFDLLKKHF VTIKFTLVSQ 540 TPGSLLETDE AWSDPEGQSW QILNSAWDRG LSVACQGNFQ CHERDVCIRV IETAKPRNDP 600 DRHHISFFTY QTLSPVSMQG DLFLSDLDSF IKSMHGKLQH Q

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MLAGLRQHGN FPLPARADMN DVLAALAREA GWTVDLDGTT YRTSPTPPPP PILPPHAAAA  60
PPHPPSQLAP FQVHSIESPL SATSMKNRAI KASLDSQQSF LKIDEGLSSS SLDSVVIAER  120
DIKNNKFNNS SPINSSECVD AEQKAVPNKL QFNTTFRSSI YPSFFMHCHS LNDITLPTKF  180
SFLFMKLLQL MQGALEQDGD FVGTPYIPVY IMLAPNFIND YCQLVDPEAV RRELEHLKAL  240
HIDGVVVDCW WGIVEGWSPH KYQWSGYRDL FNIVREFKLK LQVVLAFHEY GGKESGDMVI  300
PLPKWILEIG QDNQDIFFTD HEGRRNTECL SWGIDKERVL KGRTGIEVYF DFMRSFRMEF  360
DDLFKEDLIS AIEIGLGASG ELRFPSHSEK IGWRYPGIGE FQCYDKYMQQ NLRKAARIRG  420
HSFWARGPNN AGHYNSRPHE TGFFCDRGEY DSYYGRFFLR WYAQTLFDHA DQVLSLASLA  480
FEGTKLVVKI PSIYWWYRTS SHAAELTAGY YNPTNQDGYS PVFDLLKKHF VTIKFTLVSQ  540
TPGSLLETDE AWSDPEGQSW QILNSAWDRG LSVACQGNFQ CHERDVCIRV IETAKPRNDP  600
DRHHISFFTY QTLSPVSMQG DLFLSDLDSF IKSMHGKLQH Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1v3i_A	1e-116	206	636	11	443	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020600191.1	0.0	beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2I0WID0	0.0	A0A2I0WID0_9ASPA; Beta-amylase
STRING	XP_008808792.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]