PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03842
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 303aa    MW: 34516 Da    PI: 6.511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03842genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53101381129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhP+deelv++yL kkv+++k+ +   + evd++  ePw+Lp+++k +e+ewyfFs rd+kyatg r+nratksgyWkatgkd+ v+++ +++
  PEQU_03842  10 LPPGFRFHPSDEELVCHYLYKKVNNHKIVE-GKMVEVDLHAKEPWELPEMAKLSENEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRMVYNSkTHR 107
                 79*************************988.77***************8888899**************************************986677 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                 +vg++ktLvfy+grap+g kt+Wvmhe+rle
  PEQU_03842 108 VVGMRKTLVFYQGRAPNGMKTNWVMHEFRLE 138
                 8***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-628156IPR003441NAC domain
PROSITE profilePS5100559.53110156IPR003441NAC domain
PfamPF023657.3E-2911137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGLREIESSL PPGFRFHPSD EELVCHYLYK KVNNHKIVEG KMVEVDLHAK EPWELPEMAK  60
LSENEWYFFS FRDRKYATGL RTNRATKSGY WKATGKDRMV YNSKTHRVVG MRKTLVFYQG  120
RAPNGMKTNW VMHEFRLENL HTPPKEDWVL CRVFHKRKGE PIKIGNKNIV EQENNLSSGS  180
YLEISANDHM EQLANVSDGC HGDMGSSIPL VPYQEGNSPN TFLNFAVLQY NFFDFPHEIM  240
MGNTDVIGID SRHGGGGDEI SFLLDVGLDE YEHANGEGGG AKLMSNMEAS LRCHDGKDGM  300
VSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4911571169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594160.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ22e-65NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2I0WYB50.0A0A2I0WYB5_9ASPA; NAC domain-containing protein 21/22
STRINGXP_008810507.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]