PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 230aa MW: 24376.2 Da PI: 9.7114 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 5.9e-39 | 34 | 128 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........k 89 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ +++ss s+as s+ + PEQU_03822 34 PAKKQPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTIPASFStSSSSSISNAS---SPstfilgkrlR 128 689******************************************************************99833333333333...222346554431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-34 | 40 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MANSDPPGAA TTTAPHLITQ TSSPNNQNQL SHPPAKKQPA KDRHSKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGSGTI PASFSTSSSS SISNASSPST 120 FILGKRLRAD EDAPTKEESV GNGPPSGLWA VPTRADFGGQ FWSFAAPEMV LPTAMGRYVS 180 QPMDELSGAR VENYVPLAQG HHLNLLASFS GAAAAPASAG SNGRREDEHR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589712.1 | 1e-169 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 1e-64 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1D6ZNF6 | 1e-167 | A0A1D6ZNF6_PHAEQ; TCP transcription factor | ||||
STRING | XP_010249637.1 | 4e-71 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-53 | TCP family protein |