PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03778
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 310aa    MW: 33822.8 Da    PI: 9.4455
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03778genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21e-1846141283
    trihelix   2 WtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                 Wt +e+l Li+a+r +++r  r+              +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++  ts +    + + 
  PEQU_03778  46 WTVHETLILITAKRLDDDRRTRSGattsseepsaaprSAEQRWKWVENYCWKHGCLRSQNQCNDKWDNLLRDYKKVRDYESRAaTSSAAAAPSSYW 141
                 **************77766666533555667777777*******************************************9984455555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7638115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-442116IPR009057Homeodomain-like
PfamPF138371.4E-1245130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
TPLNILDHHH HQPLLPLSSA AAASGGLSAP SPSSTVLPRE YRKGNWTVHE TLILITAKRL  60
DDDRRTRSGA TTSSEEPSAA PRSAEQRWKW VENYCWKHGC LRSQNQCNDK WDNLLRDYKK  120
VRDYESRAAT SSAAAAPSSY WSLERHERKE RNLPTNLAFE VYEALTDVLS RRATLRRGGS  180
SPAAAPPSLP PPPSRPLPLP PPLPPPPPPP QQASVSGEMT PEGSSETEGS GGDGDGSAAA  240
AAGGGGGKRR RGLGSSVVRG AAELARTLMA CEERKERRHR DLMELEERRL RMEENRTEMN  300
RQAVAGLIAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4553202e-38AB455320.1 Echinochloa colona sh4 homologue gene, complete cds, strain: Ec/95-I-01.
GenBankAB4553212e-38AB455321.1 Echinochloa colona sh4 homologue gene, complete cds, strain: Ec/97-Pr-01.
GenBankAB4553222e-38AB455322.1 Echinochloa frumentacea sh4 homologue gene, complete cds, strain: Ec/95-PA-01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594660.11e-157uncharacterized protein LOC110034753
TrEMBLA0A2I0XIM71e-144A0A2I0XIM7_9ASPA; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09280_0011e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-38Trihelix family protein