PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 421aa    MW: 47372.2 Da    PI: 9.5416
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03310genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.85.2e-221691787
    trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                m+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  PEQU_03310  1 MDAAFRDATLKGPLWEDVSRKLAELGYTRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 69
                67899*************************************************866665..*******85 PP

2trihelix101.19e-32329414187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k evlaLi++r+ +e r+ ++  k+p We++s  m++ g++rspk+Ckekwen+nk++kk+keg+kkr +e+ +tcpyf++l+a
  PEQU_03310 329 RWPKTEVLALIKLRSGLEVRYLETGPKGPFWEDISMGMKRLGYNRSPKRCKEKWENINKYFKKVKEGNKKR-PEDAKTCPYFHELDA 414
                 8*********************************************************************8.99999********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.44E-17149No hitNo description
PfamPF138372.6E-15470No hitNo description
PROSITE profilePS500904.8321542IPR017877Myb-like domain
PROSITE profilePS500907.108322386IPR017877Myb-like domain
SMARTSM007170.004326388IPR001005SANT/Myb domain
CDDcd122032.79E-26329393No hitNo description
PfamPF138371.0E-21329415No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDAAFRDATL KGPLWEDVSR KLAELGYTRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS  60
YRFFTQLEAL HSTTNTAVPS FSPATNINPF PPLTSNPSAP SGDLMALTAV DTAQPPPTTA  120
HAGISFSSDT SSSSSSDSDA ENNDYGGAGE LPDGGRKRKR EGWPYGNGKT IAFFEKLMKQ  180
LIERQEAMQQ RFLDTIEKRE QDRMAREEAW KRQEMARLNR EYELMVQERT MTANRDAAVI  240
SFLQRFAGAG LTVTNQQDAL IEATTFSAPA PPEVSQEDQP EGQRSHQVNE IVIHQASASS  300
DPAASNAEMA PEVMGVSMPS PKSNSPPSRW PKTEVLALIK LRSGLEVRYL ETGPKGPFWE  360
DISMGMKRLG YNRSPKRCKE KWENINKYFK KVKEGNKKRP EDAKTCPYFH ELDALYRRKQ  420
Q
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589277.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2I0WPP80.0A0A2I0WPP8_9ASPA; Trihelix transcription factor GT-2
STRINGGSMUA_Achr11P03520_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-102Trihelix family protein