PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 421aa MW: 47372.2 Da PI: 9.5416 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.8 | 5.2e-22 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea PEQU_03310 1 MDAAFRDATLKGPLWEDVSRKLAELGYTRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 69 67899*************************************************866665..*******85 PP | |||||||
2 | trihelix | 101.1 | 9e-32 | 329 | 414 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e r+ ++ k+p We++s m++ g++rspk+Ckekwen+nk++kk+keg+kkr +e+ +tcpyf++l+a PEQU_03310 329 RWPKTEVLALIKLRSGLEVRYLETGPKGPFWEDISMGMKRLGYNRSPKRCKEKWENINKYFKKVKEGNKKR-PEDAKTCPYFHELDA 414 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.44E-17 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 2.6E-15 | 4 | 70 | No hit | No description |
PROSITE profile | PS50090 | 4.832 | 15 | 42 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.108 | 322 | 386 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.004 | 326 | 388 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.79E-26 | 329 | 393 | No hit | No description |
Pfam | PF13837 | 1.0E-21 | 329 | 415 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MDAAFRDATL KGPLWEDVSR KLAELGYTRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS 60 YRFFTQLEAL HSTTNTAVPS FSPATNINPF PPLTSNPSAP SGDLMALTAV DTAQPPPTTA 120 HAGISFSSDT SSSSSSDSDA ENNDYGGAGE LPDGGRKRKR EGWPYGNGKT IAFFEKLMKQ 180 LIERQEAMQQ RFLDTIEKRE QDRMAREEAW KRQEMARLNR EYELMVQERT MTANRDAAVI 240 SFLQRFAGAG LTVTNQQDAL IEATTFSAPA PPEVSQEDQP EGQRSHQVNE IVIHQASASS 300 DPAASNAEMA PEVMGVSMPS PKSNSPPSRW PKTEVLALIK LRSGLEVRYL ETGPKGPFWE 360 DISMGMKRLG YNRSPKRCKE KWENINKYFK KVKEGNKKRP EDAKTCPYFH ELDALYRRKQ 420 Q |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589277.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A2I0WPP8 | 0.0 | A0A2I0WPP8_9ASPA; Trihelix transcription factor GT-2 | ||||
STRING | GSMUA_Achr11P03520_001 | 1e-141 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-102 | Trihelix family protein |