PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30476.9 Da PI: 6.0521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.3e-16 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++++ ++G g+W+ ++ + g+ R +k+c++rw +yl PEQU_03213 5 KGLWSPEEDERLKNYIVRHGHGCWTEVPVKAGLERNGKSCRLRWINYL 52 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+el +++++lG++ W+ Ia +++ gRt++++k++w++yl PEQU_03213 58 RGRFSQEEEELAMKLHTMLGNK-WSQIAMHLP-GRTDNEVKNYWNTYL 103 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.233 | 1 | 52 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 2 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-28 | 3 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-12 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 5 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.41E-9 | 8 | 52 | No hit | No description |
PROSITE profile | PS51294 | 25.531 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 56 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.24E-10 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MKCKKGLWSP EEDERLKNYI VRHGHGCWTE VPVKAGLERN GKSCRLRWIN YLRPGIKRGR 60 FSQEEEELAM KLHTMLGNKW SQIAMHLPGR TDNEVKNYWN TYLKKRVKLS KESDSAKLTE 120 NSAADSSSEN HKNREGNLKK ISFFDSFEPL ESSSQSHAIH SQEKQRNLWP KVMFADWILG 180 ENSNGQLGLE SSDGVNGLTW DSCSFDSRET INNGDLRAMS DHQEFGEDGS YVSCFETMDL 240 VGDDQSFDLS SFGGSFGGFE LNHDLMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 5 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572557.1 | 0.0 | transcription factor LAF1-like | ||||
TrEMBL | A0A2I0VI46 | 1e-141 | A0A2I0VI46_9ASPA; Transcription factor LAF1 | ||||
STRING | XP_008794566.1 | 9e-69 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-56 | myb domain protein 19 |