PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02874

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 497aa MW: 54173.9 Da PI: 8.282

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02874	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	307.8	2.6e-94	153	496	27	373
GRAS 27 lselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124 l+ a+++g+p qRl+a+++ ALaar++ +al p+s+ s+ +se+l++ ++++e sP++k++ ++aN aIl+a++ ++++Hi+Dfdi+qGlQ PEQU_02874 153 LKGAANKHGNPEQRLTAMMVDALAARINP------RALaPVSKISDIFTSEHLTSSQMLYESSPCFKLALMAANLAILDATKDQSMIHIVDFDIGQGLQ 245 677899********************9......555244555544599********************************************* PP GRAS 125 WpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 +++l++La+R+ ps++iT++ +p+ + +l+ +g+rLak+Aeel + ++f++ v +r+++l+ +L++k +EalaVn+++ l r+ desvs PEQU_02874 246 LASFLHSLAERK-LHPSVKITAFCDPTFRfnsLAGNLNLVGNRLAKLAEELCIGLRFSI-VNRRTTELDRAALDCKAEEALAVNFAFLLSRIADESVSP 342 *******6.559*****99878878899******************9.799******************************** PP GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318 +++rde+L+ vk l Pkvv++veqe++ n+++F++rf+ea+ +y al++s+ ++ ++r+s+er+ +E+ l+r+ +n v ega+r+er e ++kW++r PEQU_02874 343 ANPRDELLRRVKALGPKVVTLVEQEMNGNTSPFAARFAEACAHYGALLESMeAVMASRASNERARIEAG-LARKSCNSVVWEGAQRVERPEVYGKWKAR 440 ***********************************************555566778*****.99*********************** PP GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 l++aGFkpv+l+ +++++++l l+ + g++++ee+g + gW++r ++++SaW PEQU_02874 441 LGMAGFKPVQLGPEVVENVSLRLASPVnKPGFMLKEEDGRVGCGWMGRIITVASAW 496 ****************98887666************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.791	91	476	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-92	153	496	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MENEAQSVVF VRSVKQKKQL QSPISSLSPT SSIQSSLSSA TIPLLRQGNQ KFSYQSFPAP 60 GSAELEKKST ITNRLLQLER QLLDDEDDVL SVSDGSAVTN SEWSETMKNL ILSQKPLEYS 120 PNSSSSSFSA SSTASSRQML LDTARAISEG NVLKGAANKH GNPEQRLTAM MVDALAARIN 180 PRALAPVSKI SDIFTSEHLT SSQMLYESSP CFKLALMAAN LAILDATKDQ SMIHIVDFDI 240 GQGLQLASFL HSLAERKLHP SVKITAFCDP TFRFNSLAGN LNLVGNRLAK LAEELCIGLR 300 FSIVNRRTTE LDRAALDCKA EEALAVNFAF LLSRIADESV SPANPRDELL RRVKALGPKV 360 VTLVEQEMNG NTSPFAARFA EACAHYGALL ESMEAVMASR ASNERARIEA GLARKSCNSV 420 VWEGAQRVER PEVYGKWKAR LGMAGFKPVQ LGPEVVENVS LRLASPVNKP GFMLKEEDGR 480 VGCGWMGRII TVASAWH

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MENEAQSVVF VRSVKQKKQL QSPISSLSPT SSIQSSLSSA TIPLLRQGNQ KFSYQSFPAP  60
GSAELEKKST ITNRLLQLER QLLDDEDDVL SVSDGSAVTN SEWSETMKNL ILSQKPLEYS  120
PNSSSSSFSA SSTASSRQML LDTARAISEG NVLKGAANKH GNPEQRLTAM MVDALAARIN  180
PRALAPVSKI SDIFTSEHLT SSQMLYESSP CFKLALMAAN LAILDATKDQ SMIHIVDFDI  240
GQGLQLASFL HSLAERKLHP SVKITAFCDP TFRFNSLAGN LNLVGNRLAK LAEELCIGLR  300
FSIVNRRTTE LDRAALDCKA EEALAVNFAF LLSRIADESV SPANPRDELL RRVKALGPKV  360
VTLVEQEMNG NTSPFAARFA EACAHYGALL ESMEAVMASR ASNERARIEA GLARKSCNSV  420
VWEGAQRVER PEVYGKWKAR LGMAGFKPVQ LGPEVVENVS LRLASPVNKP GFMLKEEDGR  480
VGCGWMGRII TVASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-40	136	497	12	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028549053.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 8
TrEMBL	A0A3G2CI15	0.0	A0A3G2CI15_CYMEN; Scarecrow-like protein 8-like transcript variant X1
STRING	XP_008783453.1	1e-152	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-96	SCARECROW-like 8