PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20459.5 Da PI: 7.4075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.4 | 1.2e-43 | 22 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfpa++p+kfa vhk+FGasnv+kll++l+ +r+da+sslvyeA+ar+rdPvyG+v+ i++lq+q++ l+a+lal+++ PEQU_02641 22 PCAACKLLRRRCVQDCIFAPYFPADEPQKFATVHKVFGASNVSKLLQELSVVQRSDAVSSLVYEANARVRDPVYGCVASISSLQRQINLLHAQLALAQA 120 7***********************************************************************************************998 PP DUF260 100 e 100 e PEQU_02641 121 E 121 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.19 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-43 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEREAKEMAN RKQGSSGAAV SPCAACKLLR RRCVQDCIFA PYFPADEPQK FATVHKVFGA 60 SNVSKLLQEL SVVQRSDAVS SLVYEANARV RDPVYGCVAS ISSLQRQINL LHAQLALAQA 120 EIVHLHLQHA ALFACSSTVA MTPLCNDATA STNTSQSVIE NANINEKTLF SIEMLLDHPN 180 IGLPMWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-47 | 15 | 123 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-47 | 15 | 123 | 4 | 112 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586032.1 | 1e-138 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 3e-59 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2I0WQB2 | 1e-125 | A0A2I0WQB2_9ASPA; LOB domain-containing protein 4 | ||||
STRING | Gorai.011G051200.1 | 3e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-60 | LOB domain-containing protein 4 |