PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TALE | ||||||||
Protein Properties | Length: 250aa MW: 28477.2 Da PI: 5.7977 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.8e-10 | 176 | 211 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ L++++gL+++q+ +WF N+R ++ PEQU_02598 176 YKWPYPSETEKIALSESTGLDQKQINNWFINQRKRH 211 4679*****************************885 PP | |||||||
2 | ELK | 31 | 5.4e-11 | 131 | 152 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +Ll+KYsgyL+sL+qE+s PEQU_02598 131 ELKLHLLKKYSGYLSSLRQELS 152 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 1.7E-8 | 1 | 23 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.8E-30 | 34 | 85 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.2E-26 | 40 | 84 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.0E-8 | 131 | 152 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 131 | 151 | IPR005539 | ELK domain |
SMART | SM01188 | 7.4E-6 | 131 | 152 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.552 | 151 | 214 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-19 | 152 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-12 | 153 | 218 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 156 | 216 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.79E-12 | 163 | 215 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 171 | 210 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 189 | 212 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDCQKVGAPP EVVARLSTVA RELEARQLAS PSGCRRGAPA DPELDQFMEA YCNMLVKYKE 60 ELTRPVQEAM DFLRKVESQL NSLTNGVTVP FFTSADEKCE GVVSSEEDQD GSGAEAEAEV 120 PEIDPRAEDK ELKLHLLKKY SGYLSSLRQE LSKKKKKGKL PKDARQKLLN WWELHYKWPY 180 PSETEKIALS ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDSFHPQN AAALYMGGQF 240 LADGNYRFGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020600067.1 | 0.0 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | O04135 | 1e-125 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A2I0XDV6 | 1e-163 | A0A2I0XDV6_9ASPA; Homeobox protein knotted-1-like 2 | ||||
STRING | XP_008798922.1 | 1e-134 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-94 | KNOTTED-like from Arabidopsis thaliana |