PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02591
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 303aa    MW: 34301.7 Da    PI: 8.3546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02591genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g +R++k+c++rw++yl
       PEQU_02591 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGMKRCGKSCRLRWLNYL 62
                     79*******************************77************97 PP
2Myb_DNA-binding452.5e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +    G++ W++Ia++++ gRt++++k++w++
       PEQU_02591  69 GGFTEEEDNIICSLYVTVGSR-WSLIASHLP-GRTDNDIKNHWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.215962IPR017930Myb domain
SuperFamilySSF466895.19E-2811109IPR009057Homeodomain-like
SMARTSM007174.6E-131364IPR001005SANT/Myb domain
PfamPF002493.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251569IPR009057Homeodomain-like
CDDcd001678.85E-101662No hitNo description
PROSITE profilePS5129423.66563117IPR017930Myb domain
SMARTSM007171.8E-1367115IPR001005SANT/Myb domain
PfamPF002499.0E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2470117IPR009057Homeodomain-like
CDDcd001677.55E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGMKRC GKSCRLRWLN  60
YLRPNLKHGG FTEEEDNIIC SLYVTVGSRW SLIASHLPGR TDNDIKNHWN TRLKKKLLGK  120
SRKDHHQHHT RPKQLEPKKL EQTNNEFYWP EPSLPSNYHE TDNQASFKKL LMKLEGRIST  180
DEAEIPPLIN AHDQNYIYGN TKASLMASST HLSSFNECFS TNLNDIFGSN EVKLEGFDSY  240
SLYGMTSMAE GITGLLGTPE AANWSSTDVS SLIYSPMAST ALNYQGTMQQ YSVYQDHQMH  300
LGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597797.10.0transcription factor RAX3-like
TrEMBLA0A2I0XDV51e-174A0A2I0XDV5_9ASPA; Transcription factor RAX3
STRINGXP_008798899.12e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-77myb domain protein 84