PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 732aa MW: 82397 Da PI: 5.9595 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.5 | 1.3e-28 | 446 | 496 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isle+l++yF++ +kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ PEQU_02529 446 EKIISLEVLQQYFKGCLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 496 899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.029 | 435 | 516 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-25 | 449 | 496 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.17E-19 | 627 | 717 | No hit | No description |
PROSITE profile | PS51745 | 18.516 | 635 | 717 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.3E-15 | 635 | 716 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.8E-19 | 635 | 717 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.6E-22 | 635 | 716 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MMKERMMQAL RYFKEWTNHH VLVQFWVPVR NEDRYVLTTS EQPFVLDPDA NGLLQYRTVS 60 LMYLFSFDED NDGALGLPGR VFKLKLPEWT PNVQYYSSKE YPRLSHALLY NVRGSLGLPV 120 FEPSSQSCVG VVELITTSEM VNYAPEVDKV CKALEAVNLR SSKILEDQSI QSCNEGRHAA 180 LVEILEILTV VCEAQKLPLA QTWVPCQHDN ILAHRDSPTC DGSCMGHVCM STSGAAFHVV 240 DAHMWGFRDA CSEHHLQKGQ GVVGRAFAAK HSCFCSDITK FSKTEYPLVH YAQMFGLGSC 300 LALFLRSSHS EDDVYIAEFF LPSDCKDLIR QRALLESIST LLKQSFQSLK VIIGAEVEGQ 360 PFEFIDIISY ANHEMQHVQD ALPTINTLEG LHEKECKCNT DHSTPEQHLV SCINSDKSTT 420 LHENGCIPAS TIITNEVAGR KRGKAEKIIS LEVLQQYFKG CLKDAAKSLG VCPTTLKRIC 480 RQHGISRWPS RKINKVNRSI SELKHVIESV QNVDVALNVN PLIRPLLLTP GTMSLPVQLD 540 RDSVSRAENT SHFKTLEVND SHDKVTSKEQ PFSTNSNQYA SVINFLEDQN MVPLSSRTDV 600 VLEPELAESD ILIEDSTSSK SARNPPSTFI QDRKTVVVKA HYKEDIIRFR MVNDAGIMAL 660 AEEIGKRLML EVGSFEIKYL DDDHDWVRLH CDEDLEECLE ISSMSDSSVI RLSVQDICLK 720 APKNVRPEMC IP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 438 | 444 | GRKRGKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597489.1 | 0.0 | protein NLP3 | ||||
Swissprot | Q5NB82 | 0.0 | NLP3_ORYSJ; Protein NLP3 | ||||
TrEMBL | A0A2H3YZL8 | 0.0 | A0A2H3YZL8_PHODC; protein NLP3 | ||||
STRING | XP_008806288.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4778 | 36 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |