PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 654aa MW: 71924.2 Da PI: 7.4778 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 330 | 389 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g PEQU_02524 330 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 389 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.4 | 9.6e-15 | 434 | 483 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PEQU_02524 434 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 483 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-13 | 330 | 389 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.68E-22 | 330 | 397 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 330 | 399 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-16 | 331 | 398 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-29 | 331 | 403 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 331 | 397 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 332 | 343 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 432 | 492 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.83E-25 | 432 | 493 | No hit | No description |
PROSITE profile | PS51032 | 19.19 | 433 | 491 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-18 | 433 | 491 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 433 | 497 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 434 | 483 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 473 | 493 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MKPMSGSGGS NNWLGFSLSS QMKMEVSCAE PQDHHHQGHQ SHHHGHHHHH HHQPQHTTPA 60 PPTAAVSNGM PGSFFLSPSH LNNSGMCYGV DGVTGGIYSE LSVMPLKSDG SLCIMEALNR 120 SQQQGLVPSP SPKLEDFLGG GPNIGTHHQF GNTEREAMAL SLDSMYYHHH NQEPKGNREQ 180 NHSLEFLQQP FRQQSSYFQP LQEGICTALT GHDMYPAPLE EEHMGDHGFP SLKNWVARNY 240 NGGINVMGGN EAGMGSGSVA AIGYGDLHSL SLSMSPGSQS SCVTAPQHIS CVGASDCMAL 300 DVSKKRMAGK GVQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR 360 KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHINFPLEN YQEELEEMMN MTRQEYVAHL 420 RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK 480 FRGANAVTNF DITRYDVDKI IASNTLLSGE LARKNKAAIG RNSDLPLIQN VSRDLDLTED 540 NSSSGSDWKM VLYQSPQHNV SVSESLNERP MLHGLFGMET VSLIHGMDDS GKPGNLHLSN 600 HSSLVTSLSS SREGSPDRAG LSKIYSKAPA KLISTPWPAI PMSGLPVFSG WSDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020600239.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-163 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2I0WFU0 | 0.0 | A0A2I0WFU0_9ASPA; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_008784660.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |