PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 115aa MW: 12537.6 Da PI: 8.8853 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 110.1 | 1.2e-34 | 18 | 97 | 19 | 97 |
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 h+lPl+rikki+k edvkmis+eaP ++skacelfi elt+r++ + + krrtl++ dia+a++ td+fdfl++++ PEQU_02490 18 HSLPLSRIKKIMKHsGEDVKMISCEAPLVFSKACELFIEELTMRAYKVTVQGKRRTLQREDIATAISATDVFDFLLEMIS 97 89***********6269**********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.14E-26 | 15 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.3E-21 | 19 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.9E-32 | 20 | 96 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MRQAGVYSGI LCGKNGPHSL PLSRIKKIMK HSGEDVKMIS CEAPLVFSKA CELFIEELTM 60 RAYKVTVQGK RRTLQREDIA TAISATDVFD FLLEMISASV ATTATDDVRA AAKSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-31 | 18 | 96 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571519.1 | 2e-80 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 3e-31 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2I0AEI5 | 7e-58 | A0A2I0AEI5_9ASPA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | VIT_02s0025g03770.t01 | 3e-49 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-33 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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