PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 153aa MW: 17902.9 Da PI: 7.1861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.4e-09 | 2 | 46 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WTteE + + +a ++ + +W +I++ ++ +++++++++++ PEQU_02344 2 KWTTEENKAFEKALVDMPDDtpdRWFRISSQIP-NKSPEDVRLHYI 46 7*****************99*************.**********96 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 1.9e-13 | 89 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++++ +++G g+W+ I+r +Rt+ q+ s+ qk+ PEQU_02344 89 PWTEEEHRRFLEGLERFGRGDWRNISRWAVRTRTPTQVASHAQKF 133 8***************************999************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.496 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-7 | 1 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.69E-7 | 2 | 49 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 2 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-11 | 2 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-8 | 2 | 46 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.458 | 82 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-17 | 84 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-17 | 85 | 137 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.5E-9 | 86 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-11 | 86 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 89 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.83E-9 | 89 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
AKWTTEENKA FEKALVDMPD DTPDRWFRIS SQIPNKSPED VRLHYIALLH DIALIDSGGF 60 DLYDEDEEDS GGRSPEQHPA KDGRKKGVPW TEEEHRRFLE GLERFGRGDW RNISRWAVRT 120 RTPTQVASHA QKFYLRQTVK KETKRKSIHD ITT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596447.1 | 1e-110 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 6e-45 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A482DH65 | 2e-95 | A0A482DH65_9ASPA; RR-type MYB transcription factor 1 (Fragment) | ||||
STRING | XP_008456608.1 | 2e-51 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 5e-48 | MYB family protein |
Publications ? help Back to Top | |||
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