PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02306

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 340aa MW: 37293.8 Da PI: 9.4413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02306	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.6e-53	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls ++ PEQU_02306 17 LPPGFRFHPTDEELVVHYLKNKASSAPLPI-TIIADVDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSCgGTL 114 79**************************.89***********99999************************************984556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ pkg kt+W+mheyrl PEQU_02306 115 KVGVKKALVFYGGKPPKGIKTNWIMHEYRL 144 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-64	7	183	IPR003441	NAC domain
PROSITE profile	PS51005	61.133	17	183	IPR003441	NAC domain
Pfam	PF02365	5.7E-28	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
AMESTDSSSA SHHQPLLPPG FRFHPTDEEL VVHYLKNKAS SAPLPITIIA DVDLYKFDPW 60 ELPEKANFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLSC GGTLKVGVKK 120 ALVFYGGKPP KGIKTNWIMH EYRLAESSSA SSRLPVGTVN YSSVAKKASL RLDDWVLCRI 180 YKKNSTNHRF SDRCIHGVIG SPAHHHSPNL QLQTPRTSSS AANYTALLDG ADETFFEALL 240 ASEDCQTQAC REKPLISHSA KQTTHLRQGV ENNTTSSSAK RFRASSNNGS GGGGGPAPSV 300 LNLLNLQIPQ HLRQETQLGD GGVASLFRQP FTLSDINWSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-73	17	185	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020600395.1	0.0	NAC transcription factor 25-like
Swissprot	A0SPJ9	8e-99	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2I0X2K6	1e-175	A0A2I0X2K6_9ASPA; NAC transcription factor NAM-2
STRING	XP_010268761.1	1e-118	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-91	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]