PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_02211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 30416.6 Da PI: 4.4439 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta Aa +++a+++++g PEQU_02211 12 CSYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTALNAAIVYDQAARAMYG 62 67*****999.**********8...2.359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-11 | 12 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.67E-28 | 12 | 70 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-19 | 13 | 70 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.943 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-31 | 13 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 13 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MRGKGGPDNS KCSYRGVRQR TWGKWVAEIR EPNRGNRLWL GTFPTALNAA IVYDQAARAM 60 YGPSACLNLP GDQFTSLNEP RTTNSESYGS ITTTTHCSNV SEDLTESSTV KKMQNGVSLN 120 VDEKKELALD SPHAETSFLR TALKEETEEE EEANVQSIDW QDISLENFDV DEMLRMMDTD 180 LNNTEVSRQR EKDASQHCSS RWHMESPSAL SFQLQNPDAK MLGSLTHMDM GINDTDFCHE 240 FIRPMRQGFD YVPVGDPELF SLGFNDGEPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020570703.1 | 0.0 | dehydration-responsive element-binding protein 2A-like isoform X1 | ||||
Refseq | XP_020570704.1 | 0.0 | dehydration-responsive element-binding protein 2A-like isoform X2 | ||||
TrEMBL | A0A2I0WNM9 | 2e-83 | A0A2I0WNM9_9ASPA; Dehydration-responsive element-binding protein 2A |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9575 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-36 | ERF family protein |