PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01516
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 702aa    MW: 78039.2 Da    PI: 6.1235
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01516genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-211469156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t+ q++eLe++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  PEQU_01516 14 KKRYHRHTPRQIQELEAMFKMCPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 69
                688999***********************************************998 PP
2START156.62e-492184412206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la + ++el+++a+ +ep+W++      e+++ +++ ++f++          ++e +r+sg v m +  lv  ++d++ +W   ++     a t+ev++
  PEQU_01516 218 LATRSMEELIRLAQTDEPLWTRIGidgrEILDLETYERIFPRPAQqfrspdARVESSRDSGDVMMHSLALVDMFMDSG-KWMDLFPtivsNARTVEVLM 315
                 78899******************9999999999999999987555789**99**************************.99888888888********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 +g      gal+lm+ e+  lsp+vp R+f f+Ry++q ++g wvi d+S+  +++++  sss     +lpSg+li++++ng+skv+wveh++ +++ p
  PEQU_01516 316 PGmdgsksGALVLMYGEFLGLSPVVPlREFCFLRYCQQIQQGLWVISDISIFYPKENQLpSSSKR---RLPSGCLIQDMPNGYSKVVWVEHMEIEEKNP 411
                 *********************************************************97444444...6****************************** PP

                 .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                  h+l++ lv sg+a+ga++wvatlqr ce+
  PEQU_01516 412 iHQLYHDLVDSGIAFGAQRWVATLQRMCER 441
                 ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21265IPR009057Homeodomain-like
SuperFamilySSF466895.85E-20870IPR009057Homeodomain-like
PROSITE profilePS5007117.411171IPR001356Homeobox domain
SMARTSM003898.9E-191275IPR001356Homeobox domain
CDDcd000864.05E-191469No hitNo description
PfamPF000469.0E-191469IPR001356Homeobox domain
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PROSITE profilePS5084845.701208444IPR002913START domain
SuperFamilySSF559617.97E-29210442No hitNo description
CDDcd088757.28E-106212440No hitNo description
SMARTSM002341.7E-41217441IPR002913START domain
PfamPF018521.3E-42218441IPR002913START domain
Gene3DG3DSA:3.30.530.206.8E-6289441IPR023393START-like domain
SuperFamilySSF559617.47E-20463699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
SGDEQDVTES KGKKKRYHRH TPRQIQELEA MFKMCPHPDE KQRMQLSRDL GLEPRQIKFW  60
FQNRRTQMKA TNFFFFIFYT QHERADNCAL RSENDKIRCE NIAMSEALRN AICPTCGSSQ  120
EAEDSYFDEQ KLRMENARLK EELDRVSTIT SKYLGRPITQ LPPIQPLSVS SLDLTVGGYG  180
NPGFTPSLEI DQLGVVPAAM AFPFLTISEI ERPMMVELAT RSMEELIRLA QTDEPLWTRI  240
GIDGREILDL ETYERIFPRP AQQFRSPDAR VESSRDSGDV MMHSLALVDM FMDSGKWMDL  300
FPTIVSNART VEVLMPGMDG SKSGALVLMY GEFLGLSPVV PLREFCFLRY CQQIQQGLWV  360
ISDISIFYPK ENQLPSSSKR RLPSGCLIQD MPNGYSKVVW VEHMEIEEKN PIHQLYHDLV  420
DSGIAFGAQR WVATLQRMCE RIACLIVTGS SPRDLGGVIP TAEGKRSMMR LAQRMVSNFC  480
STLGSSNGHR WTAPAGLNDV GIRVTVHKCS DPGQPNGVFL SAATSIWMPF SPQAVFSFFR  540
DERSRVQWDV LSNGKAVQEV TRIQNGQHPG NCISLLRAAM NPANPNEGNM LILQESCTDS  600
SGSLVVYASV DLPSINIAMS GEDPSFIPLL PSGFIVLPDG RPGTGSDASS SSNPMGGSSG  660
SVLTVAFQIM VSSLPSAKLN LESVATVNHL IGATVQQIKA AL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020600376.10.0homeobox-leucine zipper protein ROC8-like isoform X2
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2I0VTB80.0A0A2I0VTB8_9ASPA; Homeobox-leucine zipper protein ROC8
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11