PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_01450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HRT-like | ||||||||
Protein Properties | Length: 448aa MW: 49911.2 Da PI: 9.6398 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 47.9 | 2.2e-15 | 261 | 291 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+++++G +C +qP +gRKRC+eHKG++i PEQU_01450 261 ICGIATGHGLICIKQPLPGRKRCAEHKGRKI 291 8***************************997 PP | |||||||
2 | HRT-like | 45.1 | 1.6e-14 | 357 | 387 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dG vCkr Pv gRKRCe HKG+R+ PEQU_01450 357 ICGVVCGDGCVCKRRPVLGRKRCESHKGQRV 387 8*****************************7 PP | |||||||
3 | HRT-like | 54.8 | 1.6e-17 | 407 | 436 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvi ++G C+r+Pv+gRKRCeeHKG+Ri PEQU_01450 407 CGVINGNGYACSRPPVPGRKRCEEHKGRRI 436 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MRLKREDCDL TKHDFIFSKW EILIGPNDWK DHASGKDGVE RYRIHNLPAA SSCTGLYELG 60 VASIPTTEGH RLRKLDWENV IVVYLGQADN VRTRLQEYGR SGSHLDHGNL ITHRKNSESS 120 SAVGLGLFKD IFSKGYSIMF RWAPIKSKME AEKIEIQLLR IFDYAWNRKG NGMCRHAEIL 180 AMLVQNSPNS GHSPLRRLLQ WKQKTFSKRE GINIDSVVPF SEKLAPSPGL KGFLLPGILK 240 FSSSQLQFLP QDINSVNDQI ICGIATGHGL ICIKQPLPGR KRCAEHKGRK ITASGSASGR 300 MTSSCDIFLE DGTKGCEFSD GRRVTIPLLD EVVSPSQQYQ SQLAQEKFHH DKEENVICGV 360 VCGDGCVCKR RPVLGRKRCE SHKGQRVLAA VPSVDKILNS LPLNNFCGVI NGNGYACSRP 420 PVPGRKRCEE HKGRRIVSAG NINVSRAE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583664.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A2I0XD35 | 0.0 | A0A2I0XD35_9ASPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7948 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-76 | effector of transcription2 |