PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_01263

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 636aa MW: 73370.3 Da PI: 6.5885

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01263	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.7	4.9e-114	263	632	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lLl+cA+ +++g++++a+ lL ++++++sp+gd++qRla+y++ +L+arla+++se+y++l ++++ +s++l+a++l+ ++P+ k+s+ aN PEQU_01263 263 NTLLLHCAQTITAGNNQRANDLLRQIRHHSSPHGDAFQRLAHYIADGLEARLAGTGSEVYRSLVNKRKT---VSDVLKAYQLYLATCPFRKLSYSYANM 358 679**********************************************************999998...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ +++++rvHiiDf+i G+QWp +++ L+ Rp+gpp+lRiTg+++p +g +e++eetg+rLa++A+++gvpfe+++ +a ++++++lee++++ PEQU_01263 359 TILDTIQTAKRVHIIDFGIFFGFQWPVFIKMLSLRPGGPPKLRITGIDNPLPGfrPAERIEETGRRLAHYAARFGVPFEYHA-IAAKFNEVKLEEIHFR 456 **********************************************99999***********************.799********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +gE+l+Vn+ ++lh l de+v ++ +rd+vLk++++l+P v++ v + +++++ F++rf e l+++sa+fd+l+a++pre+e+r +Er + gr + n PEQU_01263 457 EGEMLVVNSLFRLHGLADETVVVDCPRDRVLKAIRELNPAVFINVVVNGSYGAPFFMTRFREVLYHFSAVFDMLDATVPRENEQRYLLERDMYGRFLIN 555 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ceg e rer et+++W++r +aGF+++pl + +k +k+ +r ++ + + ++e+ +++++ Wk+r L+ +SaWr PEQU_01263 556 AISCEGLE-RERPETYKQWQMRCLRAGFEQIPLCREFVKMVKSKVRAYYHKDFGIDEDGEWVLQEWKGRILYCLSAWR 632 ****.9***********************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.701	236	612	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-111	263	632	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MSKYRIATGS IEDFKFNNFL PHPFHAQSSL SNFPISTSLV HEAESDKSSE LFSDLVLDYI 60 KEMLMEEDMD DEYEMLQFHP NLEATEKPFY ELIGEKYPPS PDQPPLYFSS SPESSDLSQN 120 QFISPSQSSS SSVNDDELFY KTLPASQFEK GVEEAKKFLP SADKLVINFG EIDHKFHREA 180 TNSSRRPKHH HRDESAFGDL RRKKYSAISF EEPAVPPQDL DDILLCGSDF PQVVSAIREK 240 IFNEATNKST KHRRQNEEVV DLNTLLLHCA QTITAGNNQR ANDLLRQIRH HSSPHGDAFQ 300 RLAHYIADGL EARLAGTGSE VYRSLVNKRK TVSDVLKAYQ LYLATCPFRK LSYSYANMTI 360 LDTIQTAKRV HIIDFGIFFG FQWPVFIKML SLRPGGPPKL RITGIDNPLP GFRPAERIEE 420 TGRRLAHYAA RFGVPFEYHA IAAKFNEVKL EEIHFREGEM LVVNSLFRLH GLADETVVVD 480 CPRDRVLKAI RELNPAVFIN VVVNGSYGAP FFMTRFREVL YHFSAVFDML DATVPRENEQ 540 RYLLERDMYG RFLINAISCE GLERERPETY KQWQMRCLRA GFEQIPLCRE FVKMVKSKVR 600 AYYHKDFGID EDGEWVLQEW KGRILYCLSA WRPSFC

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MSKYRIATGS IEDFKFNNFL PHPFHAQSSL SNFPISTSLV HEAESDKSSE LFSDLVLDYI  60
KEMLMEEDMD DEYEMLQFHP NLEATEKPFY ELIGEKYPPS PDQPPLYFSS SPESSDLSQN  120
QFISPSQSSS SSVNDDELFY KTLPASQFEK GVEEAKKFLP SADKLVINFG EIDHKFHREA  180
TNSSRRPKHH HRDESAFGDL RRKKYSAISF EEPAVPPQDL DDILLCGSDF PQVVSAIREK  240
IFNEATNKST KHRRQNEEVV DLNTLLLHCA QTITAGNNQR ANDLLRQIRH HSSPHGDAFQ  300
RLAHYIADGL EARLAGTGSE VYRSLVNKRK TVSDVLKAYQ LYLATCPFRK LSYSYANMTI  360
LDTIQTAKRV HIIDFGIFFG FQWPVFIKML SLRPGGPPKL RITGIDNPLP GFRPAERIEE  420
TGRRLAHYAA RFGVPFEYHA IAAKFNEVKL EEIHFREGEM LVVNSLFRLH GLADETVVVD  480
CPRDRVLKAI RELNPAVFIN VVVNGSYGAP FFMTRFREVL YHFSAVFDML DATVPRENEQ  540
RYLLERDMYG RFLINAISCE GLERERPETY KQWQMRCLRA GFEQIPLCRE FVKMVKSKVR  600
AYYHKDFGID EDGEWVLQEW KGRILYCLSA WRPSFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-52	251	633	7	379	Protein SCARECROW
5b3h_D	6e-52	251	633	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020570607.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-172	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A3G2CI74	0.0	A0A3G2CI74_CYMEN; Scarecrow-like protein 14-like
STRING	XP_008777105.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-166	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]