PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01028
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 295aa    MW: 33351.5 Da    PI: 9.8576
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01028genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-141574155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpse..ng.kr..krfslgkfgtaeeAakaaiaarkkleg 55
                s y+GV++++++gr++A+++d ++   g kr  ++++lg ++ +e Aa+ ++ a++k++g
  PEQU_01028 15 SVYRGVTRHRWTGRFEAHLWDNTWrrEGqKRkgRQVYLGGYDNEERAARTYDLAALKYWG 74
                78*******************989643383347*************************97 PP
2AP251.42.8e-16117169156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 s y+GV+++++ grW A+I  ++    +k  +lg+f t+eeAa+a++ a+ k++g+
  PEQU_01028 117 SIYRGVTRHHQHGRWQARIGRVTG---NKDLYLGTFATEEEAAEAYDVAAIKFRGA 169
                 57****************999644...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-121574IPR001471AP2/ERF domain
CDDcd000183.25E-191583No hitNo description
SuperFamilySSF541714.71E-161584IPR016177DNA-binding domain
SMARTSM003806.4E-201688IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-141683IPR001471AP2/ERF domain
PROSITE profilePS5103219.1511682IPR001471AP2/ERF domain
PRINTSPR003675.5E-71728IPR001471AP2/ERF domain
CDDcd000181.80E-11117176No hitNo description
PfamPF008472.7E-11117168IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-18117177IPR016177DNA-binding domain
SMARTSM003807.6E-33118182IPR001471AP2/ERF domain
PROSITE profilePS5103219.309118176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-19118176IPR001471AP2/ERF domain
PRINTSPR003675.5E-7158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKLPVGSLVS SQRTSVYRGV TRHRWTGRFE AHLWDNTWRR EGQKRKGRQV YLGGYDNEER  60
AARTYDLAAL KYWGLAATTN FPVKNYCTEM EEMQSLTKPE FIASLRRKSS GFSRGASIYR  120
GVTRHHQHGR WQARIGRVTG NKDLYLGTFA TEEEAAEAYD VAAIKFRGAN AVTNFEFSRY  180
NLEAIANSEL PIGAKAKRMK LKLQVSNDSQ LSIRNPAASL TSTINEEPSA ILQNSLQLRC  240
SSKQPALQYC SFVGSEYSDL CDQNLHWLVP NGETIYQINN GDFVQFMHAA ASSSR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593224.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ31e-107AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2H3Y4V61e-131A0A2H3Y4V6_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008793348.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-103AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]