PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00935
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 112aa    MW: 12504.4 Da    PI: 10.377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-093880754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++ r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  PEQU_00935 38 MAARQRRERISERLRVLQRLVPGG-----RKMDTASMLDEAANYLKFL 80
                567*******************96.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0853180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-143688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.79E-123784No hitNo description
SMARTSM003535.8E-133786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-63980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-113985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MIYSAAALMP VMLGAEEQGM VEKPKRKNVR ISNDPQTMAA RQRRERISER LRVLQRLVPG  60
GRKMDTASML DEAANYLKFL KAQLGVSERS GDGSGVGSFS CEQNCIFSFP RH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599449.14e-77transcription factor HEC2-like
SwissprotQ8S3D25e-37BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A394DBX56e-39A0A394DBX5_LUPAN; Uncharacterized protein
STRINGTraes_3B_E1F2693CD.12e-39(Triticum aestivum)
STRINGGSMUA_Achr8P24970_0011e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]