PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_00926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HSF | ||||||||
Protein Properties | Length: 225aa MW: 25965.7 Da PI: 8.3078 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.2 | 1.1e-32 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+ye+++++++++li+w +++n+f+vl+++ f++++Lp yFkhsn++SF+RQLn+YgF+kv+ ++ eF+h+sF kg+ +ll i PEQU_00926 10 FVAKMYEMVNNPSTNNLIRWGKQNNTFLVLEPSLFSQTLLPFYFKHSNLSSFIRQLNTYGFRKVDPDR---------SEFAHESFLKGQIHLLPLIV 97 9*****************************************************************99.........57*****************9 PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ PEQU_00926 98 RRRK 101 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.3E-34 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-45 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.98E-32 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-27 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-17 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-17 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-17 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQQEKHLAPF VAKMYEMVNN PSTNNLIRWG KQNNTFLVLE PSLFSQTLLP FYFKHSNLSS 60 FIRQLNTYGF RKVDPDRSEF AHESFLKGQI HLLPLIVRRR KRGESDQIGR KMKRQEGNYE 120 EEEEESLMVE LGRLKKEQKA LEEEIEDVNR RLQVTERKPI QIMSLLLKLA GDPCGRGSNC 180 LAGEERKYGG CGGGEFSMAE MSSPELGPPR NVDYPFCLLG RGFLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-21 | 10 | 99 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-21 | 10 | 99 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-21 | 10 | 99 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591246.1 | 1e-166 | heat stress transcription factor C-1a-like | ||||
Swissprot | Q6VBA4 | 4e-58 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
Swissprot | Q942D6 | 2e-58 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | M0SJK0 | 5e-63 | M0SJK0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P31860_001 | 8e-64 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 9e-54 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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